View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_high_16 (Length: 475)
Name: NF18936_high_16
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_high_16 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 212 - 475
Target Start/End: Complemental strand, 2423331 - 2423068
Alignment:
| Q |
212 |
tagaagtttgtgaagtaaagaaaagcatgcatggttgattgaaaggtataaagaaaagacaaactattaattacgtaaatggttgcttgatataatatga |
311 |
Q |
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| T |
2423331 |
tagaagtttgtgaagtaaagaaaagcatgcatggttgattgaaaggtataaagaaaagacaaactattaattacgtaaatggttgcttgatataatatta |
2423232 |
T |
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| Q |
312 |
taaaagagcacgcaaaagtgctacttgcgaacatagttaggattgtataaagccaccattttaattagtagtattgttttctggattaatgttttgtgta |
411 |
Q |
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| T |
2423231 |
tcaaagagcacgcaaaagtgctacttgcgaacatagttaggattgtataaagccaccattttaattagtagtattgttttctggattaatgttttgtgta |
2423132 |
T |
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| Q |
412 |
gtgccaacagcccactattttttgctttagtcgcaagataagtgccttcccatcccatatctcc |
475 |
Q |
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| T |
2423131 |
gtgcaaatagcccactattttttgctttagtcgcaagataagtgccttcccatcccatatctcc |
2423068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 9 - 215
Target Start/End: Complemental strand, 2423560 - 2423354
Alignment:
| Q |
9 |
gacatcatcaagtcattgtatgacatcaaaagttaatgttgtttcataaaagtgtagaccttgaattattttcaaatgatttttatcattgatttgaggt |
108 |
Q |
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| T |
2423560 |
gacatcatcaagtcattgtatgacatcaaaagttaatgttgtttcataaaagtgtaaaccttgaattattttcaaatgatttttatcattgatttgaggt |
2423461 |
T |
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| Q |
109 |
tgaacctatcaaaaactacatcacatcacacaattactatcttaaatcgaaatccttcccaccattcatgtcaacttgagttggggtactgtgtatgtgt |
208 |
Q |
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| T |
2423460 |
tgaacctatcaaaaactacatcacatcacacaattactatcttaaatcgaaatccttcccaccattcatgtcaacttgagttggggtactgtgtatgtgt |
2423361 |
T |
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| Q |
209 |
tagtaga |
215 |
Q |
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||||||| |
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| T |
2423360 |
tagtaga |
2423354 |
T |
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