View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_high_19 (Length: 455)
Name: NF18936_high_19
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 14 - 437
Target Start/End: Original strand, 34359000 - 34359423
Alignment:
| Q |
14 |
atcatggttgattgtgtttgtttattttaatattactccatgattgcagtacagtaaaagatagattaaaatatctattaacactgagatagtgaaatat |
113 |
Q |
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| T |
34359000 |
atcatggttgattgtgtttgtttattttaatattactccatgattgcagtacagtaaaagatagattaaaatatctattaacactgagatagtgaaatat |
34359099 |
T |
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| Q |
114 |
aatatttgaatccctccatgattgaaatattttttataaccacttgtctggccctgtctgctctcacctaatgccaacttgaattctacaaaccaccgcc |
213 |
Q |
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| T |
34359100 |
aatatttgaatccctccatgattgaaatattttttataaccacttttctggccctgtctgctctcacctaatgccaacttgaattctacaaaccaccgcc |
34359199 |
T |
|
| Q |
214 |
agtacttaacaactcaagggctttagttatttttgagaaataattcccttcaagttaagagtgatataaagaactaaaattcatacttgtcaagatttca |
313 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34359200 |
agtacttaacgactcaagggctttagttatttttgagaaataattcccttcaagttaagagtgatataaagaactaaaattcatacttgtcaagatttca |
34359299 |
T |
|
| Q |
314 |
tgcaccatccaagaagggtttcatttcattgttgttcatttgtatattctttcttcactgcacaattgtctcggaaatgagtgcaaactgcaaagtctaa |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34359300 |
tgcaccatccaagaagggtttcatttcattgttgttcatttgtatattctttcttcactgcacaattgtctcggaaatgagtgcaaactgctaagtctaa |
34359399 |
T |
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| Q |
414 |
atgccttgaataaattgttttcgt |
437 |
Q |
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| T |
34359400 |
atgccttgaataaattgttttcgt |
34359423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 34353379 - 34353583
Alignment:
| Q |
18 |
tggttgattgtgtttgtttattttaatattactccatgattgcagtacagtaaaagatagattaaaatatctattaacactgagatagtgaaatataata |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| | || ||||||||||||||||||||| |||| |||||| | |||||||||||||| |
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| T |
34353379 |
tggttgattgtgtttgtttattttaatattacaccatgattgaaatatagtaaaagatagattaaaataataattagcactgaaacagtgaaatataata |
34353478 |
T |
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| Q |
118 |
tttgaatccctccatgattgaaatattttttataaccacttgtctggccctgtctgctctcacctaa-tgccaacttgaattctacaaaccaccgccagt |
216 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| ||||||| |||||| ||||||||||||| | |
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| T |
34353479 |
tttgaatacctccatgattgaaatattttttataaccacttgtctgaccctgtcagcactcacctaaccgccaactccaattctgcaaaccaccgccatt |
34353578 |
T |
|
| Q |
217 |
actta |
221 |
Q |
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||||| |
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| T |
34353579 |
actta |
34353583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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