View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_high_2 (Length: 784)
Name: NF18936_high_2
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 31 - 418
Target Start/End: Original strand, 31043567 - 31043952
Alignment:
| Q |
31 |
atatttcgagtgaaggccaaccattaccggctattcaactcgtgaacaacacccttggaaccatcacttggtgcaattgtgctttgattatgatatggcc |
130 |
Q |
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| T |
31043567 |
atatttcaagtgaaagccaaccattaccggctattcagctcgtgaacaacacgcttggaaccatcacttg-tgcaattgtgctttgattatgatacggcc |
31043665 |
T |
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| Q |
131 |
caaagtattttgatgatgcccctaattccatcggtggagaggacaagctcatttggaaaaaggagaaagccggtgcattataccgtaaaaagtgcatatg |
230 |
Q |
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| T |
31043666 |
caaagtattttgatgatacccctaattccatcg-tggagaggacaagctcatttggaaaaaggagaaagccggggcattatatagtaaaatgtgcatatc |
31043764 |
T |
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| Q |
231 |
gtttatgtttggaagaaattgcggataattcatatttgcataggccaggtcattgggcaggtatatggaaattaaaggtgcttcgcaaggtggaaaactt |
330 |
Q |
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| T |
31043765 |
gtgtatgcttggaagaaattgcggataattcatatttgtataggccaggtcactgggaaggtatatggaaattaaagatgcttcccaaggtggaaaactt |
31043864 |
T |
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| Q |
331 |
gatttagcggatgtgccgaggttttctcccaacacgggcaagacaaaaagacagaggaatcaattgtctgactgaaaaaattatttga |
418 |
Q |
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| T |
31043865 |
gatttggcggatgtgccaaggttttctcccaacaagtgcaagacagaaaggttgaggaatcaattgtccgactgacaaaattatttga |
31043952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 31108842 - 31108926
Alignment:
| Q |
32 |
tatttcgagtgaagg---ccaaccattaccggctattcaactcgtgaacaacacccttggaaccatcacttggtgcaattgtgctt |
114 |
Q |
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| T |
31108842 |
tatttcgagtgaagggcgccaatcattaccggctattcagctcatgaacaagaaacttggaagcatcac-tcgtgcaattgtgctt |
31108926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 86 - 308
Target Start/End: Original strand, 13696550 - 13696772
Alignment:
| Q |
86 |
tggaaccatcacttggtgcaattgtgctttgattatgatatggcccaaagtattttgatgatgcccctaattccatcggtgg-agaggacaagctcattt |
184 |
Q |
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| T |
13696550 |
tggaaccatcacttggcgcaagagtttttttattatgctacgggtcagagtattttgaatacgacccttatcccatcgatggtagaggacaagctcattt |
13696649 |
T |
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| Q |
185 |
ggaaaaaggagaaagccggtgcattataccgtaaaaagtgcatatggtttatgtttggaagaaattgcggataattcatatttgcataggccaggtcatt |
284 |
Q |
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| T |
13696650 |
ggaaaaaggaaaaagttga-gcactatacggttaaaaatgcataccatttatgtttggaataaattctggatgattcatatttgcatcagcctggtcagt |
13696748 |
T |
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| Q |
285 |
gggcaggtatatggaaattaaagg |
308 |
Q |
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| T |
13696749 |
gggcagttataaggaaattaaagg |
13696772 |
T |
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