View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_high_20 (Length: 447)
Name: NF18936_high_20
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 47736087 - 47735666
Alignment:
| Q |
18 |
ctaatagcatagtgtctcttaccacaattctcaactaattttgcatattatctttttgtacataggtctatctcttcaggtggtgnnnnnnntgtttctg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47736087 |
ctaatagcatagtgtctcttaccacaattctcaactaattttgcatattatctttttgtacataggtctatctcttcaggtggtgaaaaaaatgtttctg |
47735988 |
T |
|
| Q |
118 |
atagcatcaaagtcttggtaagtcggctcattctactnnnnnnntaaataaattaagttaccaacggaaattatggaccgaaaaaa-tgatatatgtaac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47735987 |
atagcatcaaagtcttggtaagtcggctcattctactaaaaaaataaataaattgagttaccaacggaaattatggaccgaaaaaaatgatatatgtaac |
47735888 |
T |
|
| Q |
217 |
acttagcaacgaaattatgaacggatttcatttttagtactgacaatgtaagaatttgcagggaacggcgttactctttgatttaaaccatcaattacca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47735887 |
acttagcaacgaaattatgaacggatttcatttttagtactgacaatgtaagaatttgcagggaacggcgttactctttgatttaaaccatcaattacca |
47735788 |
T |
|
| Q |
317 |
ttgacaatggaagttgaatccttggaatttgttatagcaaggtggccattctttgtcttcttaggtggttcaatgttctgtctcctctctagcagcattt |
416 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47735787 |
ttgacaatggaagttgaatccttggaatttgttatagcaaggtggccattctttgtcttcttaggtggttcaatgttctgtctcctctctagcagcattt |
47735688 |
T |
|
| Q |
417 |
gtcacctattttcatctcactc |
438 |
Q |
| |
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||||||||||||||| |||||| |
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| T |
47735687 |
gtcacctattttcatgtcactc |
47735666 |
T |
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