View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_high_23 (Length: 435)
Name: NF18936_high_23
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 8 - 420
Target Start/End: Original strand, 36675715 - 36676127
Alignment:
| Q |
8 |
tgaaaagaaataacaaacacaaaccttaacactgagagagtaaagaacaatttcaccagtagtagtaacatttaaatgcaagattgtgagacgcatgttt |
107 |
Q |
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| T |
36675715 |
tgaaaagaaataacaaacacaaaccttaacactgagagagtaaagaacaatttcaccaatagtagtaacatttaaatgcaagattgtgagacgcatgttt |
36675814 |
T |
|
| Q |
108 |
tgcaaaccagatacaattttcaagagctgctttggcctctttcttgatcttattttaagatttgcatggttttccaccattgtcacttctatgtcagcaa |
207 |
Q |
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| T |
36675815 |
tgcaaaccagatacaattttcaagagctgctttggcctctttcttgatcttattttaagatttgcatggttttccaccattgtcacttctatgtcagcaa |
36675914 |
T |
|
| Q |
208 |
tgcaagattgaatctcaccaactttttcaccaatagtagctacagaattagaattatcacacacactaccacttgttgaatactgtggaaatgtaaagaa |
307 |
Q |
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| T |
36675915 |
tgcaagattgaatctcaccaactttttcaccaatagtagctacagaattagaattatcacacacactaccacttgttgaatactgtggaaatgtaaagaa |
36676014 |
T |
|
| Q |
308 |
ctcagaaaatggcatgttgtttgatccaccagcttcatcagatttcacatctctttctttcttagcaccaagaaaatgaaacttgtgctcaagctcttta |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676015 |
ctcagaaaatggcatgttgtttgatccaccagcttcatcagatttcaccactctttctttcttagcaccaagaaaatgaaacttgtgctcaagctcttta |
36676114 |
T |
|
| Q |
408 |
acaaagttaatag |
420 |
Q |
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| T |
36676115 |
acaaagttaatag |
36676127 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 208
Target Start/End: Complemental strand, 46922450 - 46922272
Alignment:
| Q |
30 |
accttaacactgagagagtaaagaacaatttcaccagtagtagtaacatttaaatgcaagattgtgagacgcatgttttgcaaaccagatacaattttca |
129 |
Q |
| |
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|||||||| |||||||| || | |||| |||| ||| ||||| ||||| | |||||||||||||||| || ||||||| ||| || || |||| |
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| T |
46922450 |
accttaacgctgagagaatagaagacaaattcatcagctgtagtgacattaaggtgcaagattgtgagacacaatccatgcaaactagaaaccatcttca |
46922351 |
T |
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| Q |
130 |
agagctgctttggcctctttcttgatcttattttaagatttgcatggttttccaccattgtcacttctatgtcagcaat |
208 |
Q |
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||||||| ||||| || || ||| ||||||||| |||||||||||| |||| |||||||| ||||| || |||||||| |
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| T |
46922350 |
agagctgttttggtcttttctttgttcttattttgagatttgcatggctttcaaccattgtaacttcaatatcagcaat |
46922272 |
T |
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