View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18936_high_26 (Length: 433)
Name: NF18936_high_26
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 122 - 416
Target Start/End: Complemental strand, 34721565 - 34721264
Alignment:
| Q |
122 |
tggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaatgtcggggaa |
221 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
34721565 |
tggcaagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaacgaagggagtttcctcctaaatgtcggggaa |
34721466 |
T |
|
| Q |
222 |
gtttgggaacaagacaatggccaagtttctttacaacaacagcttgttta-------tgttatcggcggcaacagaagagtaatgataaattcagttgaa |
314 |
Q |
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| T |
34721465 |
gtttgggaacaagacaatggccaagtttctttacaacaacagcttgtttaatgtttatgttatcggcggcaacagaagagtaatgataaattcagttgaa |
34721366 |
T |
|
| Q |
315 |
ttgggaaaaaggatgttgcaagggatgcttccccggaggaaaatgtttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgcataa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34721365 |
ttgggaaaaaggatgttgcaagggatgcttccccggaggaaaatgtttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgcataa |
34721266 |
T |
|
| Q |
415 |
gt |
416 |
Q |
| |
|
|| |
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|
| T |
34721265 |
gt |
34721264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 16 - 415
Target Start/End: Complemental strand, 34716114 - 34715709
Alignment:
| Q |
16 |
acttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgcttgg |
115 |
Q |
| |
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||||||| ||||| |||||||| || ||||| |||||||||| |||||| |||||| | ||| | | | ||| |||| || |||| |||||||||| |
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| T |
34716114 |
acttatttgttgcggaccatccagtgggggtggaatctcgtgtacaagaggttattcaactactaaaatcccgacaatcagaagatcctgtactgcttgg |
34716015 |
T |
|
| Q |
116 |
gatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtc---actcttttaactaagggaatttcctcctaaat |
212 |
Q |
| |
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|||||| |||| |||||||||||||||||||| ||||| ||| | ||||||| || ||| || || |||| | | ||| |||||| ||||| |
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| T |
34716014 |
gatatggggcggaggagggatcggtaaaacaacaattgccaaagcagtttataatgaaatccatcgccaccattttgaggcaaggagcttcctcttaaat |
34715915 |
T |
|
| Q |
213 |
gtcggggaagtttgggaacaagacaatggccaagtttctttacaacaacagcttgtttatgttatc---ggcggcaacagaagagtaatgataaattcag |
309 |
Q |
| |
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||||| ||||||||| ||||||| |||||| |||||||||||||| |||| ||| ||| ||||||| || ||| ||||||| ||| ||||||| ||| |
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| T |
34715914 |
gtcggtgaagtttggaaacaagataatggcgaagtttctttacaaaaacaacttatttctgttatcagaagcagcagcagaagaataacgataaatacag |
34715815 |
T |
|
| Q |
310 |
ttgaattgggaaaaaggatgttgcaagggatgcttccccggaggaaaatgtttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtg |
409 |
Q |
| |
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|||||| ||||||||||| ||||| | || ||||||||| |||| || || |||||| | ||||||||||||||| |||| |||| ||||||||| |
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| T |
34715814 |
ttgaatccggaaaaaggatattgcaggagaggcttccccgttggaagatattacttgtggttgacgatgtgaataaaaaagaccaattgggtgctttgtg |
34715715 |
T |
|
| Q |
410 |
cataag |
415 |
Q |
| |
|
|||||| |
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|
| T |
34715714 |
cataag |
34715709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 34727989 - 34727740
Alignment:
| Q |
12 |
acagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgc |
111 |
Q |
| |
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|||||||||||||||||||||||||| || |||||||| ||||||| |||||||||||| | ||| || ||| || | ||| || ||| |||||| |
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| T |
34727989 |
acagacttattcgttgcagaccatccagtgggggtagattctcgtgttcaagatgttattcaactactgaacaatcaagaatcaaaagaccctttactgc |
34727890 |
T |
|
| Q |
112 |
ttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaa |
211 |
Q |
| |
|
|||| ||||| ||| |||||||||||| |||||||| ||||||||| | ||||||||||| | |||||| |||| | || |||||||||||| |
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| T |
34727889 |
ttggaatatggggcatgggagggatcggcaaaacaacaattgctaaagctgcttataataaaattcgtcacgattttgaggcgaagagtttcctcctaaa |
34727790 |
T |
|
| Q |
212 |
tgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac |
261 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||||||| ||||||||| |
|
|
| T |
34727789 |
tgtcagggaagtttgggaacaagataatggtgtagtttctctacaacaac |
34727740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 12 - 261
Target Start/End: Original strand, 18928737 - 18928986
Alignment:
| Q |
12 |
acagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgc |
111 |
Q |
| |
|
||||| |||||||||||||||||||| || |||||||| ||||||| ||||||||| || | |||||| || | | | ||| || ||| |||||| |
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|
| T |
18928737 |
acagaattattcgttgcagaccatccagtgggggtagattctcgtgttcaagatgttgttcaactattgaactgtcacgaatcaaaagaccctttactgc |
18928836 |
T |
|
| Q |
112 |
ttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaa |
211 |
Q |
| |
|
|||| ||||| || |||||||||||| |||||||| ||||||||| | ||||||||||| | |||||| |||| | | || |||||||||||| |
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|
| T |
18928837 |
ttggaatatggggtatgggagggatcggcaaaacaacaattgctaaagctgcttataataaaattcgtcacgattttgatgcaaagagtttcctcctaaa |
18928936 |
T |
|
| Q |
212 |
tgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac |
261 |
Q |
| |
|
|||| |||||| ||||||||| || ||||| || |||||| ||||||||| |
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| T |
18928937 |
tgtcagggaagattgggaacacgataatgggcaggtttctctacaacaac |
18928986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 34730959 - 34730898
Alignment:
| Q |
200 |
tttcctcctaaatgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac |
261 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||| ||||||| ||||||||| |
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|
| T |
34730959 |
tttcctcctaaatgtcagggaagtttgggaacaagataatggcatagtttctctacaacaac |
34730898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 34717871 - 34717711
Alignment:
| Q |
13 |
cagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgct |
112 |
Q |
| |
|
|||||||||| |||| |||||||| || | ||| |||||| ||| ||||||||||||| | || || ||||| |||| ||| || |||||||| | |
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|
| T |
34717871 |
cagacttatttgttgtggaccatccagtcgaggttgaatcttgtgtacaagatgttatttaacttctgaacagccaacaatcaaaagactctctactgat |
34717772 |
T |
|
| Q |
113 |
tgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaa |
173 |
Q |
| |
|
||||||||| ||| ||||||||| | ||||||||||||||||||||| |||||||||| |
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|
| T |
34717771 |
tgggatatgaggcatgggagggattgacaaaacaaccattgctaaatccggttataataaa |
34717711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 18924027 - 18924081
Alignment:
| Q |
208 |
taaatgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaaca |
262 |
Q |
| |
|
|||||||| || |||||||||||||||| |||||| ||||||||||||||||||| |
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|
| T |
18924027 |
taaatgtccggcaagtttgggaacaagataatggcgaagtttctttacaacaaca |
18924081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 262
Target Start/End: Complemental strand, 34735746 - 34735496
Alignment:
| Q |
12 |
acagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgc |
111 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||||| | ||||||| |||||| | ||| | |||||| |||| || | ||| | ||| |||||| |
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|
| T |
34735746 |
acagacttatttgttgcggaccatccggtgggggtaaagtctcgtgttcaagatatcattcaactattgaacagtcaagaatcaaaatcccctttactgc |
34735647 |
T |
|
| Q |
112 |
ttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaa |
211 |
Q |
| |
|
| || |||| ||| |||||||||||| |||||||| ||||||||| | ||||||||||| | | |||| |||| | || |||||||| ||| |
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|
| T |
34735646 |
tcggagtatggggcatgggagggatcggcaaaacaacaattgctaaagctgcttataataaaattcatcacgattttgaggcgaagagtttcctcccaaa |
34735547 |
T |
|
| Q |
212 |
tgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaaca |
262 |
Q |
| |
|
|||| ||||||| ||||||||||| |||||| ||||||| |||||||||| |
|
|
| T |
34735546 |
tgtcagggaagtctgggaacaagataatggcgtagtttctctacaacaaca |
34735496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 34730799 - 34730749
Alignment:
| Q |
360 |
tttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgc |
410 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
34730799 |
tttcttgtgctggacgatgtgaataaactggaccaattgaatgctttgtgc |
34730749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 34735398 - 34735348
Alignment:
| Q |
360 |
tttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgc |
410 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
34735398 |
tttcttgtgctggacgatgtgaataaactggaccaattgaatgctttgtgc |
34735348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 18923835 - 18923890
Alignment:
| Q |
16 |
acttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttatt |
71 |
Q |
| |
|
||||||||||||| |||||||| || ||||| |||||||||| |||||| |||||| |
|
|
| T |
18923835 |
acttattcgttgcggaccatcctgtgggggttgaatctcgtgtacaagaggttatt |
18923890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 18929085 - 18929135
Alignment:
| Q |
360 |
tttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgc |
410 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| ||| ||||||||||| |
|
|
| T |
18929085 |
tttcttgtgttggacgatgtgaataaagaggaccaattgaatgctttgtgc |
18929135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 416
Target Start/End: Original strand, 18924129 - 18924238
Alignment:
| Q |
307 |
cagttgaattgggaaaaaggatgttgcaagggatgcttccccggaggaaaatgtttcttgtgttggacgatgtgaataaactgaaccagttggatgcttt |
406 |
Q |
| |
|
||||||||| ||||||| ||| ||||| | |||||||| | || || ||||| |||||| ||||| |||||||| ||| | | || ||||||||||| |
|
|
| T |
18924129 |
cagttgaatcaggaaaaatgatattgcaggaaatgcttccacagaagaggatgttacttgtggtggacaatgtgaatgaacagcatcaattggatgcttt |
18924228 |
T |
|
| Q |
407 |
gtgcataagt |
416 |
Q |
| |
|
|||||||||| |
|
|
| T |
18924229 |
gtgcataagt |
18924238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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