View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_high_27 (Length: 430)
Name: NF18936_high_27
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_high_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 23 - 430
Target Start/End: Complemental strand, 42270930 - 42270523
Alignment:
| Q |
23 |
ctgaaattctaacgcacattatttcgtgatatagagactagttttcatcataacatatagcacaattgtaataattaacaatatacgaaacttacgataa |
122 |
Q |
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| T |
42270930 |
ctgaaattctaacgcacattatttcgtgatattgagactagttttcattataacatatagcacaattgtaataattaacaatttacgaaacttacgataa |
42270831 |
T |
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| Q |
123 |
aacatgactccatagttggttatccgaagaatgttcggccatgaagtcgttggaggaaggtggtgcatgcggctcgacggatactcttcgagaggattca |
222 |
Q |
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| T |
42270830 |
aacatgactccatagttggttatccgaagcatgttcggccatgaagtcgttggaggaaggtggtgcatgcggctcgacgaatactcttcgagaggattca |
42270731 |
T |
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| Q |
223 |
acagtgaggcttgaatggtttgatgcattggtgaaagatgtagaagaaactgatatatcttgatcctcacaagaagaggaagaatttggattattcattt |
322 |
Q |
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| T |
42270730 |
acagtgaggcttgaatggtttgatgcattggtgaaagatgtagaagaaactgatatatcttgatcctcacaagaagaggaagaatttggattattcattt |
42270631 |
T |
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| Q |
323 |
ggttgttccatgcatgtttaacatcattccaattagaagaaagagaatttgcttgaagataccaccagtttaatggagtagtagaggtagcaatagtgtt |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42270630 |
ggttgttccatgcatgtttaacatcattccaattagaagaaagagaatttgcttgaagataccaccagtttaatggagtagtagaggtagcaatagtgtt |
42270531 |
T |
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| Q |
423 |
tccaccac |
430 |
Q |
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| T |
42270530 |
tccaccac |
42270523 |
T |
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