View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_high_29 (Length: 415)
Name: NF18936_high_29
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 3918673 - 3919070
Alignment:
| Q |
1 |
ccattctttacattagaattagctcctttggttctaaatcctaacagcttagttgtgaatgtcttattcattgttgagtccagtttatcaatgaagaacc |
100 |
Q |
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| T |
3918673 |
ccattctttacattagaattagctcctttggttctaactcctaacagcttagttgtgaatgtcttattcattgttgagtccagtttatcaatgaagaacc |
3918772 |
T |
|
| Q |
101 |
aaattgaaatgaaagcttacgcattttggcaaaggccaatagtggtttatgtctcaaccacacctactcatagnnnnnnnnnnnnaa-atacgtactcat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | || ||||||| |
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| T |
3918773 |
aaattgaaatgaaagcttacgcattttggcaaaggccaatagtggtttatgtctcaaccacacctactcatagtttttttttttcaatacacctactcat |
3918872 |
T |
|
| Q |
200 |
atcttagcatcttcaaatgttaaaagagtgcaggcccgttggccattacctgaatagaaaatgtcaaattacctgagaagcaaagtgtctgtgtccaggt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3918873 |
atcttagcatcttcaaatgttaaaagagtgcaggcccgttggccattacctgaatagaaaatgtcaaattacctgagaagcaaagtgtctgtgtccaggt |
3918972 |
T |
|
| Q |
300 |
gataaagtacttgaggctcggcccattgctctctcgagcaagatgcgcatggatttctccttctgtaggtgtagctgtagctgctcaacctgcatatc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3918973 |
gataaagtacttgaggctcggcccattgctctctcgagcaagatgcgcatggatttctccttctgtaggtgtagctgtagctgctcaacctgcatatc |
3919070 |
T |
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