View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_high_3 (Length: 671)
Name: NF18936_high_3
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-163; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 298762 - 298452
Alignment:
| Q |
1 |
gctgttctttgacgtagttttgtagctcggtcaatcaatgaagttccggcctcttcatacatgctttgccaatccttaaattctgcatctgaaagatcac |
100 |
Q |
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| T |
298762 |
gctgttctttgacgtagttttgtagctcggtcaatcaatgaagttccggcctcttcatacatgctttgccaatccttaaattctgcatctgaaagatcac |
298663 |
T |
|
| Q |
101 |
ttgaggcaattacaagagtccttaaaccttggaagaatattcactcaaatgattctgagttggatgcttaattcaaatgttgcttgcatagtcatttgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
298662 |
ttgaggcaattacaagagtccttaaaccttggaagaatattcactcaaatgact-----ttggatgcttaattcaaatgttgcttgcatagtcatttgct |
298568 |
T |
|
| Q |
201 |
aaaatgctaaactttgaaacgtcagcacttttaacaaacattgtcgggaaatccaatacagcatacatcctcttttgcactctatcaaactcatgcaggc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
298567 |
aaaatgctaaactttgaaacgtcagcacttttaacaaacattgtcgggaaatccaatacagcatacatcctcttttgcactctatcaaactcatgcaggc |
298468 |
T |
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| Q |
301 |
ccgatacgtccaacct |
316 |
Q |
| |
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|||||||||||||||| |
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| T |
298467 |
ccgatacgtccaacct |
298452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 330 - 649
Target Start/End: Complemental strand, 298382 - 298063
Alignment:
| Q |
330 |
aacaacttaaaaagtccaacattcattacaaataataatacagcatgtgatctcccaccaagtctaaatggaactcgctgtttacttgatcttctcacca |
429 |
Q |
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| T |
298382 |
aacaacttaaaaagtccaacattcattacaaataataatacagcatgtgatctcccaccaagtctaaatggaactcgctgtttacttgatcttctcacca |
298283 |
T |
|
| Q |
430 |
ttgacgtcaaaaaagacatcctttgcnnnnnnntgcgtacatctataagcagaggcagtagaaactagagcttgttcatcaggagattcttcctggtaaa |
529 |
Q |
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| T |
298282 |
ttgacgtcaaaaaagacatcctttgctaaaaaatgcgtacatctataagcagaggcagtagaaactagagcttgtttatcaggagattcttcctggtaaa |
298183 |
T |
|
| Q |
530 |
caatactttctatatcttcatttgattcgcttgttccagaatatgacaagtttctggccaataagaatagagatcacagtactacaagcagctaatatga |
629 |
Q |
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| T |
298182 |
caatactttctatatcttcatttgattcgcttgttcctgaatatgacaagtttctggccaataagaatagagatcacagtactacaagcagctaatatga |
298083 |
T |
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| Q |
630 |
ggaaaaacccaaaagcagct |
649 |
Q |
| |
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| T |
298082 |
ggaaaaacccaaaagcagct |
298063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 300964 - 300752
Alignment:
| Q |
8 |
tttgacgtagttttgtagctcggtcaatcaatgaagttccggcctcttcatacatgctttgccaatccttaaattctgcatctgaaagatcacttgaggc |
107 |
Q |
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||||| ||||||||| || | ||| |||||||||||| | |||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||| |
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| T |
300964 |
tttgaggtagttttgcagtttggttaatcaatgaagtgcttccctcttcataaatgctttgccaatccttaaattctgcatccgaaagttcccttgaggc |
300865 |
T |
|
| Q |
108 |
aattacaagagtccttaaaccttg-gaagaatattcactcaaatg-attctgagttggatgcttaattcaaatgttgcttgcatagtcatttgctaaaat |
205 |
Q |
| |
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|||||||||||||||||||||||| || |||||||||||||||| || ||||||||| ||||||| | |||||||||| |||||||||| |||||||| |
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| T |
300864 |
aattacaagagtccttaaaccttgcaaataatattcactcaaatgaatgttgagttggaggcttaatgctaatgttgcttacatagtcattagctaaaat |
300765 |
T |
|
| Q |
206 |
gctaaactttgaa |
218 |
Q |
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||||||| ||||| |
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| T |
300764 |
gctaaacattgaa |
300752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 478 - 567
Target Start/End: Original strand, 27466156 - 27466245
Alignment:
| Q |
478 |
gcagaggcagtagaaactagagcttgttcatcaggagattcttcctggtaaacaatactttctatatcttcatttgattcgcttgttcca |
567 |
Q |
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|||||||| | |||||||||||||||||||||||| |||||| |||||||| |||| | |||| || ||| ||| |||| ||||||||| |
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| T |
27466156 |
gcagaggccgcagaaactagagcttgttcatcaggggattctccctggtaatcaatgcattctgcatattcgtttaattcacttgttcca |
27466245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 27465867 - 27465915
Alignment:
| Q |
265 |
acatcctcttttgcactctatcaaactcatgcaggcccgatacgtccaa |
313 |
Q |
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|||| |||||| |||| |||||||||||||||| |||| |||||||||| |
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| T |
27465867 |
acattctctttcgcacgctatcaaactcatgcaagcccaatacgtccaa |
27465915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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