View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18936_high_30 (Length: 409)

Name: NF18936_high_30
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18936_high_30
NF18936_high_30
[»] chr2 (3 HSPs)
chr2 (137-389)||(42156341-42156582)
chr2 (137-379)||(42290807-42291045)
chr2 (131-389)||(42166821-42167069)


Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 137 - 389
Target Start/End: Original strand, 42156341 - 42156582
Alignment:
Q  137 tgtagagttaagcacttaccatccaagcatgaagtctagtcctcgttcaacagcgttctgatccaattttttatcagaaagtggaaggaaccaatgagac 236  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42156341 tgtagaattaagcccttaccatccaagcatgaagtctagtcctcgttcaacagcgttctgatccaattttttatcagaaagtggaaggaaccaatgagac 42156440  T
Q  237 gccaatgttatgcctatcacgcccttttgagattcctgcatatatatagatcatgttttggttattaaatatatatcttgaacttaattaaattaagttc 336  Q
    |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||    ||||||||||||   |||||||||||||    
T  42156441 gccaatgttatgcctatcacgcccttttgagattcctgc----atatagatcatgttttggttattaa----atatcttgaact---ttaaattaagttc 42156529  T
Q  337 ttatctaagttataacaaacctgatacttcttcttgtacacatggacagctgc 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42156530 ttatctaagttataacaaacctgatacttcttcttgtacacatggacaactgc 42156582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 137 - 379
Target Start/End: Complemental strand, 42291045 - 42290807
Alignment:
Q  137 tgtagagttaagcacttaccatccaagcatgaagtctagtcctcgttcaacagcgttctgatccaattttttatcagaaagtggaaggaaccaatgagac 236  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||| || ||||| ||||| ||||||||| |||||| |||||||  ||||    
T  42291045 tgtagagttaagcacttaccatccaaacatgaagtctagtcctcgttcagcagctttttgatcgaatttattatcagaatgtggaatgaaccaactagac 42290946  T
Q  237 gccaatgttatgcctatcacgcccttttgagattcctgcatatatatagatcatgttttggttattaaatatatatcttgaacttaattaaattaagttc 336  Q
     |||| |||||||||||||| ||||||||||||||||  ||||| ||| ||||| ||||||||||    ||  |||||| ||||   |||||||||||||    
T  42290945 accaaggttatgcctatcacacccttttgagattcctatatataaatatatcattttttggttat----taggtatctttaact---ttaaattaagttc 42290853  T
Q  337 ttatctaagtt---ataacaaacctgatacttcttcttgtacacat 379  Q
    |||||||||||   ||||||||||||||||||||||||||||||||    
T  42290852 ttatctaagttataataacaaacctgatacttcttcttgtacacat 42290807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 131 - 389
Target Start/End: Original strand, 42166821 - 42167069
Alignment:
Q  131 tttcaatgtagagttaagcacttaccatccaagcatgaagtctagtcctcgttcaacagcgttctgatccaattttttatcagaaagtggaaggaaccaa 230  Q
    ||||||| |||| ||||||||||||||||||| ||||||||| |   | || ||| |||| || ||||| ||||| || || |||| |||||  ||||||    
T  42166821 tttcaatatagatttaagcacttaccatccaaacatgaagtccacggcccgctcagcagcattttgatcgaatttgttgtcggaaaatggaataaaccaa 42166920  T
Q  231 tgagacgccaatgttatgcctatcacgcccttttgagattcctgcatatatatagatcatgttttggttattaaatatatatcttgaacttaattaaatt 330  Q
    | |||| |||| ||||||||||| || ||||||||||||||||||||||| ||  ||  | ||||||||||||  |||    |||||||||   ||||||    
T  42166921 ttagacaccaaggttatgcctattacacccttttgagattcctgcatataaatc-at--ttttttggttattaggtat----cttgaactt---taaatt 42167010  T
Q  331 aagttcttatctaagttataacaaacctgatacttcttcttgtacacatggacagctgc 389  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  42167011 aagttcttatctaagttataacgaacctgatacttcttcttgtacacatcgacagctgc 42167069  T

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