View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_high_34 (Length: 396)
Name: NF18936_high_34
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 379
Target Start/End: Complemental strand, 14192634 - 14192263
Alignment:
| Q |
8 |
agcagcacagatcttttccctggtttcaaatattgggtcttcggcatctattgctggctgattaagtttactgagaaactgtaacagaaaacaaccatcc |
107 |
Q |
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| T |
14192634 |
agcagcacacatcttttccctggtttcaaatattgggtcttggggatctattgttgggtgttcaagtctactgagaagctgtaacagaaaacaaccatcc |
14192535 |
T |
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| Q |
108 |
aatatcattgttctcccgataacatctgcagttaattctgaacctaagatgctagcatcatagcttgcgcgggtgtctatttcaaatatgggaatatcta |
207 |
Q |
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| T |
14192534 |
aatatcatttttctcccgataacatctgtagttaattctgaacctaagatgctaccatcatagcttgcgcggatgtctatttcaaatatgggaatatctt |
14192435 |
T |
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| Q |
208 |
cgttacatgcccttaacattgtcatgaatagttctggttcatgctgctggttttcttgacgcagaaacctgtccatgtattgccatttattgcctaccat |
307 |
Q |
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| T |
14192434 |
cgctacatgcacttaaccttgtgtcgaatgttcctggtacattctgctggttttcttgaagcagaaacctgttcatgtattgccatttaatgcctaccat |
14192335 |
T |
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| Q |
308 |
caattggacttggtggtagctcgtttctcccctgggtaagaaccctataaagatagactttggcgtgtaagc |
379 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14192334 |
caattggacttggcggtagttcgtttctcccctgggtaagagtcctataaagatagactttggcgtgtaagc |
14192263 |
T |
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