View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_high_36 (Length: 390)
Name: NF18936_high_36
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 14742213 - 14741965
Alignment:
| Q |
19 |
aggcacatctggagcatttgatccaagcagtagatctcctggtatgcacacatcctatttttaattgagtttctttgtggagttgaggtgcagatttgga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14742213 |
aggcacatctggagcatttgatccaagcagtagatctactggtatgcacacatcctatttttaattgagtttctttatggagttgaggtgcagatttgga |
14742114 |
T |
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| Q |
119 |
tccctttaaggaataaattttgcaaaagggaagtgtttcaattattgtattttcgactccagaaatgatagaaaatggcaatataaacatgt-acccttt |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14742113 |
tccctttaaggaataaattttgcaaaagcgaagtgtttcaattattgtattttcgactccagaaatgatagaaaatggcaatataaacatgtaacccttt |
14742014 |
T |
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| Q |
218 |
tgctgtttatatattaaaggcttactgcctgtgtgattttaatactctg |
266 |
Q |
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||||||||||| |||||||||||| ||| |||||||||||||||||||| |
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| T |
14742013 |
tgctgtttataaattaaaggcttattgcatgtgtgattttaatactctg |
14741965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 15010431 - 15010650
Alignment:
| Q |
19 |
aggcacatctggagcatttgatccaagcagtagatctcctggtatgcacacatcctatttttaattgagtttctttgtggagttgaggtgcagatttgga |
118 |
Q |
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|||||||||| |||| ||| |||||||||||||||| |||||||| ||||| | ||||||||||| || ||||||||||||||||||||| || || |
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| T |
15010431 |
aggcacatctagagctgttgttccaagcagtagatctactggtatgtgtacatcatgtttttaattgaccttgtttgtggagttgaggtgcagaatttga |
15010530 |
T |
|
| Q |
119 |
tccctttaaggaataaattttgcaaaagg-gaagtgtttcaatta-ttgtattttcgactccagaaatgatagaaaatggcaatataaacatgtaccctt |
216 |
Q |
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| T |
15010531 |
tcccttaaaggaagaaaatttgcaaaaagtgaagtgtttcaattgcttgt-ttttcgactccagaaatgatagaaaatggcaatataaacatgtaccctt |
15010629 |
T |
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| Q |
217 |
ttgctgtttatatattaaagg |
237 |
Q |
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||| |||||||| ||||||| |
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| T |
15010630 |
ttggtgtttatagcttaaagg |
15010650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 67 - 208
Target Start/End: Original strand, 14290463 - 14290604
Alignment:
| Q |
67 |
cacatcctatttttaattgagtttctttgtggagttgaggtgcagatttggatccctttaaggaataaattttgcaaaagggaagtgtttcaatta-ttg |
165 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| |||||| ||| |
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| T |
14290463 |
cacatcctgtttttaattgattttctttgtggagttgaggtgcagatttggatccctttgaggaagaaaatttgcaaaagggaagtgttccaattacttg |
14290562 |
T |
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| Q |
166 |
tattttcgactccagaaatgatagaaaatggcaatataaacat |
208 |
Q |
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| T |
14290563 |
t-ttttcgactcctgaaatgatagaaaatggcaatataaacat |
14290604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 15053357 - 15053579
Alignment:
| Q |
19 |
aggcacatctggagcatttgatccaagcagtagatctcctggtatgcacacatcctatttttaattgagtttctttgtggagttgaggtgcagatttgga |
118 |
Q |
| |
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|||||||||| |||| ||| |||||||| | ||||| ||||||| |||||||| ||||||||||| ||||| ||| | || ||||||||||||||| |
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| T |
15053357 |
aggcacatctagagctgttgttccaagcaattgatctactggtatttgcacatcctgtttttaattgattttctatgttg-gtcgaggtgcagatttggg |
15053455 |
T |
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| Q |
119 |
tccctttaaggaataaattttgcaaaaggga-----agtgtttcaatta-ttgtattttcgactccagaaatgatagaaaatggcaatataaacatgtac |
212 |
Q |
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|||||||||| || ||| |||||||||| | ||| ||||||||| |||| |||| ||||| ||||||||| |||||||||||||||||||||||| |
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| T |
15053456 |
tccctttaagaaagaaaatttgcaaaagaaagtataagtatttcaattacttgtttttt-gactctagaaatgattgaaaatggcaatataaacatgtac |
15053554 |
T |
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| Q |
213 |
ccttttgctgtttatatattaaagg |
237 |
Q |
| |
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| |||||||||||||| ||||||| |
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| T |
15053555 |
cattttgctgtttataacttaaagg |
15053579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 138 - 269
Target Start/End: Original strand, 14283223 - 14283354
Alignment:
| Q |
138 |
ttgcaaaagggaagtgtttcaatta-ttgtattttcgactccagaaatgatagaaaatggcaatataaacatgtacccttttgctgtttatatattaaag |
236 |
Q |
| |
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||||||||||||||||||||||||| |||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
14283223 |
ttgcaaaagggaagtgtttcaattacttgt-tattcgactccagaaattctagaaaatggcaatataaacatgtacccttttgctgttcataacttaaag |
14283321 |
T |
|
| Q |
237 |
gcttactgcctgtgtgattttaatactctgttg |
269 |
Q |
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| |||| ||||||||| |||| |||||||| |
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| T |
14283322 |
gtacactgtatgtgtgattataatgctctgttg |
14283354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 295 - 366
Target Start/End: Complemental strand, 14741961 - 14741890
Alignment:
| Q |
295 |
gtagtatgagtcttttactttgccatatttctaactggagttgattatcaatcttgaacgaaataactgaac |
366 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| | |||||||||| |
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| T |
14741961 |
gtagtatgagtcttttactttgccatgtttctagctggagttgattatcaatcttgaacaatataactgaac |
14741890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 295 - 359
Target Start/End: Original strand, 15053617 - 15053681
Alignment:
| Q |
295 |
gtagtatgagtcttttactttgccatatttctaactggagttgattatcaatcttgaacgaaata |
359 |
Q |
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| T |
15053617 |
gtagtatgagtcttttactgtgccatgtttctaactggagttgattatcaatcttgaacaaaata |
15053681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 15010685 - 15010746
Alignment:
| Q |
292 |
ctggtagtatgagtcttttactttgccatatttctaactggagttgattatcaatcttgaac |
353 |
Q |
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||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
15010685 |
ctggtagtatgagtcgtttactgtgccatgtttctaactggagttgattatcaatcttgaac |
15010746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 14283141 - 14283196
Alignment:
| Q |
76 |
tttttaattgagtttctttgtggagttgaggtgcagatttggatccctttaaggaa |
131 |
Q |
| |
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|||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14283141 |
tttttaattgcttttctttgtggcgttgaggtgcagatttggatccctttaaggaa |
14283196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 14283356 - 14283417
Alignment:
| Q |
300 |
atgagtcttttactttgccatatttctaactggagttgattatcaatcttgaacgaaataact |
362 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||| ||||||||| |||||||| |
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| T |
14283356 |
atgagtcttttactgtgccatttttctaactggagttgattatcgatcttgaac-aaataact |
14283417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 15056246 - 15056144
Alignment:
| Q |
19 |
aggcacatctggagcatttgatccaagcagtagatctcctggtatgcacacatcctatttttaattgagtttctttgtggagttgaggtgcagatttgga |
118 |
Q |
| |
|
|||||||||| |||| ||| ||||||| |||||||| |||||||| ||||||| |||||||||| ||||| |||| |||| ||| ||||||||||| |
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| T |
15056246 |
aggcacatctagagctgttgttccaagccgtagatctactggtatgtgtacatcctgcttttaattgattttctctgtgaagttaaggcgcagatttgga |
15056147 |
T |
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| Q |
119 |
tcc |
121 |
Q |
| |
|
||| |
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|
| T |
15056146 |
tcc |
15056144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 14290660 - 14290699
Alignment:
| Q |
322 |
tttctaactggagttgattatcaatcttgaacgaaataact |
362 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||| |
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| T |
14290660 |
tttctaactggagttgattatcaatcttgaac-aaataact |
14290699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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