View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_high_40 (Length: 361)
Name: NF18936_high_40
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_high_40 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 43076572 - 43076212
Alignment:
| Q |
1 |
aaaacatagaaaatgaaattcatgtttgaagtattattcttagaaagaaagaatgttacaaacaaaagaaaaatgtaggtggagaatgtgatttggaact |
100 |
Q |
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| T |
43076572 |
aaaacatagaaaatgaaattcatgtttgaagtattattcttagaaagaaagaatgttacaaacaaaagaaaaatgtaggtggagaatgtgatttggaact |
43076473 |
T |
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| Q |
101 |
atacaaaaattggcttgtgtcatggttttatatacaagttatgttattcaggtgggaccatatattaactgaagctgaatcagagaatcatttacagaga |
200 |
Q |
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| T |
43076472 |
atacaaaaattggcttgtgtcatggttttatatacaagttatgttattcaggtgggaccatatattaagtgaagctgaatcagagaatcatttacagaga |
43076373 |
T |
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| Q |
201 |
gatagatagataggtcacgggtgcattgcatctattgatatatgttcaaagaaattaagagagatgaacaatctaaattctaaaccacaggcacgggaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43076372 |
gatagatagataggtcacgggtgcattgcatctattgatatatgttcaaagaaattaagagagatgaacaatctaaattctaaaccacaggcacaggaca |
43076273 |
T |
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| Q |
301 |
tgttgcactttttgttcataaaattgttcttttaatattttttgttttggttcatatcact |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43076272 |
tgttgcactttttgttcataaaattgttcttttaatattttttgttttggttcatgtcact |
43076212 |
T |
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