View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18936_high_47 (Length: 309)
Name: NF18936_high_47
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_high_47 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 41106156 - 41106329
Alignment:
| Q |
18 |
atataccatataaattatttaatgagcatgttaatttttgcttataataacaacgagagaatgtatagttatatgtaaggataattcttatatgatcaca |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||| |||||||| |||||||||||| |||| |||||| ||||||||||||||||||| ||||| |
|
|
| T |
41106156 |
atataccatataaattatttaatgaacatgttgatttttgtttataatagcaacgagagaatatataattatatataaggataattcttatatggtcaca |
41106255 |
T |
|
| Q |
118 |
actacaaattcaacttatatttagacacaaacaattacacatcaattaatgttttcggtaaaaacaagaagttg |
191 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41106256 |
attacaaattcaacttatatttagacacaaacaattacacatcaattaatgttttcgataaaaacaagaagttg |
41106329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 41106375 - 41106437
Alignment:
| Q |
237 |
tcatctgtgagtgtatctaaattatttaaatttgcagttgtgacacataatcattgctctgtg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41106375 |
tcatctgtgagtgtatctaaattatttaaatttgcagttgtaacacataatcattgctctgtg |
41106437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University