View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18936_high_5 (Length: 606)

Name: NF18936_high_5
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18936_high_5
NF18936_high_5
[»] chr4 (5 HSPs)
chr4 (333-606)||(34358750-34359023)
chr4 (13-302)||(34358436-34358724)
chr4 (337-606)||(34353129-34353398)
chr4 (67-257)||(34352854-34353040)
chr4 (135-250)||(34369011-34369126)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 333 - 606
Target Start/End: Original strand, 34358750 - 34359023
Alignment:
Q  333 tagtgtgtgaaaccgacctgtgtaatatcatcggcaatattgagaacatcgttgctagtttgggattcgacataaacagtggaagacgaaaagatcctgg 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34358750 tagtgtgtgaaaccgacctgtgtaatatcatcggcaatattgagaacatcgttgctagtttgggattcgacataaacagtggaagacgaaaagatcctgg 34358849  T
Q  433 tggagctgaaacagtggctgatacggccagcacgcaaagcacaagtcaaagacttgactaaggaggaagaagccgttgttgtttgttgagaattctcaga 532  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34358850 tggagctgaaacagtggctgatacggccagcacgcaaagcacaagtcaaagacttgactaaggaggaagaagccattgttgtttgttgagaattctcaga 34358949  T
Q  533 tcacataacattgttaaaagaagataaggtacaagcacgaaatgcacaagatcatggttgattgtgtttgttta 606  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34358950 tcacataacattgttaaaagaagataaggtacacgcacgaaatgcacaagatcatggttgattgtgtttgttta 34359023  T

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Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 34358436 - 34358724
Alignment:
Q  13 aatatcacccgttgactgacccacaaatatagaaaggaaacnnnnnnnnnnntacaagataaaggaaccaaaatgtttaaaaaggaagaagagaacgatt 112  Q
    ||||||||||||||||||||| |||||||||||||||||||           | |||||||| |||||||||||||||||||||||||||||||||||||    
T  34358436 aatatcacccgttgactgaccaacaaatatagaaaggaaacaaaaaaaaaa-tgcaagataatggaaccaaaatgtttaaaaaggaagaagagaacgatt 34358534  T
Q  113 aatgttgtcatacacacacatctacctgtctttgacactacaacaaggctccataacctcaagctttgcagcaatgttagcaactgagcccttagtgata 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34358535 aatgttgtcatacacacacatctacctgtctttgacactacaacaaggctccataacctcaagctttgcagcaatgttagcaactgagcccttagtgata 34358634  T
Q  213 ctcttcaggtaaaccattggcgtttttcctatgagctgtgccatgcaagcagcnnnnnnnntggagattcatcgccgaattgcatgctac 302  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||        |||||||||||| ||||||||||||||||    
T  34358635 ctcttcaggtaaaccattggcgtttttcctatgagttgtgccatgcaagcagcaaaaaaaatggagattcatcaccgaattgcatgctac 34358724  T

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Target: chr4; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 337 - 606
Target Start/End: Original strand, 34353129 - 34353398
Alignment:
Q  337 gtgtgaaaccgacctgtgtaatatcatcggcaatattgagaacatcgttgctagtttgggattcgacataaacagtggaagacgaaaagatcctggtgga 436  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||    
T  34353129 gtgtgaaaccgacctgtgtaatatcatcggcaatattgagatcatcgttgctagtttgggattcgacagagacaatggaagacgaaaagatcctggtgga 34353228  T
Q  437 gctgaaacagtggctgatacggccagcacgcaaagcacaagtcaaagacttgactaaggaggaagaagccgttgttgtttgttgagaattctcagatcac 536  Q
    ||||||| |||||||||||||||  ||||| |||||||||| ||||||||| ||||||||||||||| || |||| | ||||||||||||||||||||||    
T  34353229 gctgaaagagtggctgatacggcaggcacgaaaagcacaagacaaagacttcactaaggaggaagaaaccattgtcgcttgttgagaattctcagatcac 34353328  T
Q  537 ataacattgttaaaagaagataaggtacaagcacgaaatgcacaagatcatggttgattgtgtttgttta 606  Q
    |||||||| |||||||||||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||    
T  34353329 ataacattattaaaagaagataaggtacacgcaagaaatacacaagatcgtggttgattgtgtttgttta 34353398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 67 - 257
Target Start/End: Original strand, 34352854 - 34353040
Alignment:
Q  67 caagataaaggaaccaaaatgtttaaaaaggaagaagagaacgattaatgttgtcatacacacacatctacctgtctttgacactacaacaaggctccat 166  Q
    |||||||||| ||||||||||||||||||||||||||||||| | ||||| ||||| ||||||    |||||||||||||||||||||||| ||||||||    
T  34352854 caagataaagaaaccaaaatgtttaaaaaggaagaagagaacaactaatgctgtcacacacac----ctacctgtctttgacactacaacatggctccat 34352949  T
Q  167 aacctcaagctttgcagcaatgttagcaactgagcccttagtgatactcttcaggtaaaccattggcgtttttcctatgagctgtgccatg 257  Q
    || ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34352950 aagctcaagcttagcagcaatattagcaactgagcccttagtgatactcttcaggtaaaccattggcgtttttcctatgagctgtaccatg 34353040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 135 - 250
Target Start/End: Original strand, 34369011 - 34369126
Alignment:
Q  135 tacctgtctttgacactacaacaaggctccataacctcaagctttgcagcaatgttagcaactgagcccttagtgatactcttcaggtaaaccattggcg 234  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||| || ||||| | ||| || ||||| ||||||||||| |    
T  34369011 tacctgtctttgacactacaacaaggctccataatctcaagcttagcagcaatattagcaacggaaccctttgcgatgctattcagataaaccattggtg 34369110  T
Q  235 tttttcctatgagctg 250  Q
    ||||||||||||||||    
T  34369111 tttttcctatgagctg 34369126  T

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