View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_high_50 (Length: 304)
Name: NF18936_high_50
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_high_50 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 43076667 - 43076924
Alignment:
| Q |
13 |
aatatgaccaaagtccaagaatcagaacaacaattcatgaaatgggtgaaatttgttggtggtctcaaacatactgtctttagaacagccaaaaataagc |
112 |
Q |
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| T |
43076667 |
aatatgaccaaagtccaagaatcagaacaacaattcatgaaatgggtgaaatttgttggtggtctcaaacatactgtctttagaacagccaaaaataagc |
43076766 |
T |
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| Q |
113 |
tttttccttcttatactttgaacgtttataaacattcaagtaaaggaggattttcatcaattcaagcagccattgattcccttcccttcattaatttagt |
212 |
Q |
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| T |
43076767 |
tttttccttcttatactttgaacgtttataaacattcaagtaaaggaggattttcatcaattcaagcagccattgattcccttcccttcattaatttagt |
43076866 |
T |
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| Q |
213 |
gagagttgtcattaaggttcatgcaggggtttacacgtaagtacttgtgctattatac |
270 |
Q |
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| T |
43076867 |
gagagttgtcattaaggttcatgcaggggtttacacgtaagtacttgtgctattatac |
43076924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 35 - 255
Target Start/End: Complemental strand, 33966889 - 33966669
Alignment:
| Q |
35 |
cagaacaacaattcatgaaatgggtgaaatttgttggtggtctcaaacatactgtctttagaacagccaaaaataagctttttccttcttatactttgaa |
134 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | | | || ||||||||||| ||| |||||||||||||| | |
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| T |
33966889 |
cagaacaacaattcatgaaatgggtgagttttgttggtggtctcaaacacactgtttacaaggctgcaaaaaataagctatttgcttcttatactttgca |
33966790 |
T |
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| Q |
135 |
cgtttataaacattcaagtaaaggaggattttcat-caattcaagcagccattgattcccttcccttcattaatttagtgagagttgtcattaaggttca |
233 |
Q |
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| T |
33966789 |
cgttgataagaatccttcttttgga-gattttgatacaattcaaaatgccattgattctcttccttccatcaatcttgttagagttgtcatcaaggttca |
33966691 |
T |
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| Q |
234 |
tgcaggggtttacacgtaagta |
255 |
Q |
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| T |
33966690 |
tgcaggagtttacacgtgagta |
33966669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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