View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_high_51 (Length: 303)
Name: NF18936_high_51
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_high_51 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 39540737 - 39541029
Alignment:
| Q |
1 |
caaagttttaatcaacatctcaaacttataactaagtagagtagcaatatggattttccttaataaatttagcttgattagttaagaatttcaaatttac |
100 |
Q |
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| T |
39540737 |
caaagttttaatcaacatctcaaacttataactaagtagagtagtaatatggattttccttaataaatttagcttgattagttaagaatttcaaatttac |
39540836 |
T |
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| Q |
101 |
aacttcctcttcataatttattcgtgtggaatcatcatcactaaactgattcagtgaagttggaaaaattgttaaccctgagctactttataagaaaata |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39540837 |
aacttcctcttcgtaatttattcgtgtggaatcatcatcactaaactgattcagtgaagttggaaaaattgttaaccctgagctactttataagaaaata |
39540936 |
T |
|
| Q |
201 |
tggcttctctgaaatttaactggtactaacaaagaatcaggggctaatatccaattgatcctgtaaactccacgaggccattcatctcctttg |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39540937 |
tggcttctctgaaatttaactggtactaacaaagaatcaggggctaatatccaattgatcctgttaactccacgaggccattcatctcctttg |
39541029 |
T |
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