View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_high_55 (Length: 295)
Name: NF18936_high_55
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_high_55 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 38041115 - 38040857
Alignment:
| Q |
18 |
cagcatgttataaaagacatgataatggnnnnnnnncaaagcaaaagagattaatattaannnnnnnncagaggagattaatactattaaaactttgttt |
117 |
Q |
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| T |
38041115 |
cagcatgttataaaagacatgataatggttttttttcaaagcaaaagagattaatattaattttttttcataggagattaatactattaaaactttgttt |
38041016 |
T |
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| Q |
118 |
gagcaataatactattaaaacttaacaagtacaagaagtataagagtttacaacaatataaacatgaactacaaccaaatgctagctaattaaaacacag |
217 |
Q |
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| T |
38041015 |
gagcaataatactattaaaacttaacaagtacaagaagtataagagtttacaacaatataaacatgaactacaaccaaatgctagctaattaaaacacag |
38040916 |
T |
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| Q |
218 |
accaacaaagaaagtttatcaagaatcgggtgttgattttgatgaactccctctctcac |
276 |
Q |
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| T |
38040915 |
accaacagagaaagtttatcaagaatcgggtgttgattttgatgaactccctctctcac |
38040857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 31841533 - 31841309
Alignment:
| Q |
19 |
agcatgttataaaagacatgataatggnnnnnnnn--caaagcaaaagagattaatattaannnnnnnncagaggagattaatactattaaaactttgtt |
116 |
Q |
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| T |
31841533 |
agcatgttataaaagacatgataatggttttttttttcaaagcaaaagagattaatattaagtttttt-cagaggagattaatattattaaaactttgtt |
31841435 |
T |
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| Q |
117 |
tgagcaataatactattaaaacttaacaagtacaagaagt---ataagagtttacaacaatataaacatgaactacaaccaaatgctagc-taattaaaa |
212 |
Q |
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| T |
31841434 |
tgagcaaaaatactattaaaacttaacaagtacaagaagtggaagaagaatttacaacaatataaacatgagctacaaccaaatgctagcttaattaaaa |
31841335 |
T |
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| Q |
213 |
cacagaccaacaaagaaagtttatca |
238 |
Q |
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| T |
31841334 |
cacaaagcaacagagaaagtttatca |
31841309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 86 - 238
Target Start/End: Complemental strand, 31837432 - 31837276
Alignment:
| Q |
86 |
cagaggagattaatactattaaaactttgtttgagcaataatactattaaaacttaacaagtacaagaagt---ataagagtttacaacaatataaacat |
182 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| |
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| T |
31837432 |
cagaggagattaatactattacaactttgtttgagcaaaaatactattaaaacttaacaagtacaagaagtggaagaagaatttacaacaatataaacat |
31837333 |
T |
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| Q |
183 |
gaactacaaccaaatgctagc-taattaaaacacagaccaacaaagaaagtttatca |
238 |
Q |
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| T |
31837332 |
gagctacaaccaaatgctagcttaattaaaacacaaagcaacagagaaagtttatca |
31837276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 31837244 - 31837204
Alignment:
| Q |
236 |
tcaagaatcgggtgttgattttgatgaactccctctctcac |
276 |
Q |
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| T |
31837244 |
tcaagaatcgggtgttgattttgatgaactccctctctcac |
31837204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 31841281 - 31841241
Alignment:
| Q |
236 |
tcaagaatcgggtgttgattttgatgaactccctctctcac |
276 |
Q |
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| T |
31841281 |
tcaagaatcgggtgttgattttgatgaactccctctctcac |
31841241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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