View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_high_56 (Length: 291)
Name: NF18936_high_56
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_high_56 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 2123078 - 2122806
Alignment:
| Q |
13 |
actgtgtaaaaattggtcaaacaaatctaaactattataactttcctacggctgagattaact----------actgcgtgaagcagttacatcaagaaa |
102 |
Q |
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| T |
2123078 |
actgtgtaaaaactggtcaaataaatctgaactgttataacttttctacggctgagattaacttctgcgtgtaactgcgtgaagcagttacaacaagaaa |
2122979 |
T |
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| Q |
103 |
tccagtcccatcaaaacggcgaacaaaataacttcgcaccgaagctatgaaatcaaggaaaacnnnnnnntaaatctatagaaaccacttcgaaaaatac |
202 |
Q |
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| T |
2122978 |
tccaatccgatcaaaacggcgaacaaaataacttcgcaccgaagctatgaaatcaaggaaaacaaaaaagtaaatctatagaaaccacttcaaaaaatac |
2122879 |
T |
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| Q |
203 |
acaattttcccaagtgcagttataataattcaacnnnnnnnacttttaccatatgtcacgtatgtgtgatatg |
275 |
Q |
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| T |
2122878 |
acaattttcccaagtgtagttataataattcaacttttttaacttttaccatatgtcacgtatgtgtgatatg |
2122806 |
T |
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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 18028126 - 18028215
Alignment:
| Q |
21 |
aaaattggtcaaacaaatctaaactattata--actttcctacggctgagattaactactgcgtgaagcagttacatcaagaaatccagt |
108 |
Q |
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| T |
18028126 |
aaaactggtcaaacaaatctgaaccgttatattacttttctacggctgagattaactactgcgtgaagcagttacagcaggaaatccagt |
18028215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 6364697 - 6364770
Alignment:
| Q |
21 |
aaaattggtcaaacaaatctaaactattata--actttcctacggctgagattaactactgcgtgaagcagtta |
92 |
Q |
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|||||||||||||||||||| ||| ||||| ||||| ||||| ||||||||||||||| ||||||| ||||| |
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| T |
6364697 |
aaaattggtcaaacaaatctgaaccgttatattacttttctacgactgagattaactactacgtgaagtagtta |
6364770 |
T |
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