View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_high_72 (Length: 252)
Name: NF18936_high_72
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_high_72 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 2149910 - 2150146
Alignment:
| Q |
1 |
tttcctatcataagatttcttaactataaaaacattaaaaacaaaaggggttggttacctttctccaaccatgtccaagaaattcattcacagctatagc |
100 |
Q |
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| T |
2149910 |
tttcctatcataagatttcttaactataaaaacattaaaaacaaaaggggttggttacctttctccaaccatgtccaagaaattcattcacagctatagc |
2150009 |
T |
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| Q |
101 |
attttgtccatacatcaatggcgacgaccaataaccccacagaaaccatttatgcacatcctctaatgcaaaataacaatgttatcataagaaagattca |
200 |
Q |
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| T |
2150010 |
attttgtccatacatcaatggcgacgaccaataaccccacagaaaccatttatgcacatcctctaatgcaaaataacaatgttatcataagaaagattca |
2150109 |
T |
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| Q |
201 |
atatattatgaaattttgaagttacattaccattttt |
237 |
Q |
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| T |
2150110 |
atatattatgaaattttgaagttacattaccattttt |
2150146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 55 - 173
Target Start/End: Original strand, 2162016 - 2162134
Alignment:
| Q |
55 |
ttacctttctccaaccatgtccaagaaattcattcacagctatagcattttgtccatacatcaatggcgacgaccaataaccccacagaaaccatttatg |
154 |
Q |
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| T |
2162016 |
ttacctttctccaactatgtccaagaaattcattcacagctatagcattctgtccatacatcaatggtgacgaccaataaccccacagaaaccatttgtg |
2162115 |
T |
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| Q |
155 |
cacatcctctaatgcaaaa |
173 |
Q |
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| T |
2162116 |
cacgtcctctgatgcaaaa |
2162134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 49771729 - 49771686
Alignment:
| Q |
74 |
tccaagaaattcattcacagctatagcattttgtccatacatca |
117 |
Q |
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| T |
49771729 |
tccaaggaattcattcacagctatagcattttgtccatacatca |
49771686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 2885973 - 2885919
Alignment:
| Q |
64 |
tccaaccatgtccaagaaattcattcacagctatagcattttgtccatacatcaa |
118 |
Q |
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|||||| || |||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
2885973 |
tccaactatctccaaggaattcattcaccattatagcattttgtccatacatcaa |
2885919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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