View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_high_8 (Length: 577)
Name: NF18936_high_8
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 49849737 - 49849168
Alignment:
| Q |
1 |
aattagagaaacataattgattacatagaacaaggtactatgttatcagaacgatgtatttatcgacattttgtttatcgtcaagccatattttttcgtc |
100 |
Q |
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| T |
49849737 |
aattagagaaacataattgattacatagaacaagatactatgttatcagaacgatgtatttatcgatattttgtttatcgtcaagccatattttttcgtc |
49849638 |
T |
|
| Q |
101 |
aacgatactcaaacatgaaacc-ttacgtaaggtattcaagtcgattttcatcaaatattatttaaatcatatatatat----------tttatttattc |
189 |
Q |
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||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
49849637 |
aacgataatcaaacatgaaacccttacgtaaggtattcaagtcgattttcatcaaatattatttaaatcatatatatatatatatatattttgtttattc |
49849538 |
T |
|
| Q |
190 |
ttggtcctaacgtatagactgttagtccctactgcctagtacctagtctaccaaacccgtatagtgaaattccatgaggagcatatataaaagcatgaac |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49849537 |
ttggtcctaacgtatagactgttagtccctactgcctagtacctagtctaccaaacccgtatagtgaaattccatgaggagcatatataaaagcatgaac |
49849438 |
T |
|
| Q |
290 |
atgtaccatgttactcacactcctaaaacttatttctaaattgcaactacctagtgtttaaattccacaccttcaatannnnnnngatcttgaacacagc |
389 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49849437 |
atgtaccatgttactcacactcctaaaacatatttctaaattgcaactacctagtgtttaaattccacaccttcaattttttttttatcttgaacacagc |
49849338 |
T |
|
| Q |
390 |
ttgtacatctttgtatgatgaacaccactagaacattagctatgtccacaactacaaagaaagagtttggtaattctaaagaagaaaatgagctgagaag |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49849337 |
ttgtacatctttgtatgatgaacaccactagaacattagctatgtccacaactacaaagaaagagtttggtaattctaaagaagaaaatgagctgagaag |
49849238 |
T |
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| Q |
490 |
aggaccttggactcttgaagaagatagcttactaatacactatattgctcgtcatggtgaaggtcgttgg |
559 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49849237 |
aggaccttggactcttgaagaagatagcttactaatacactatattgctcgtcatggtgaaggtcgttgg |
49849168 |
T |
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