View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18936_high_89 (Length: 237)

Name: NF18936_high_89
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18936_high_89
NF18936_high_89
[»] chr8 (4 HSPs)
chr8 (17-228)||(6028216-6028427)
chr8 (22-64)||(8084367-8084409)
chr8 (47-111)||(10989216-10989280)
chr8 (47-111)||(43599376-43599440)
[»] chr4 (5 HSPs)
chr4 (57-111)||(10390450-10390504)
chr4 (27-97)||(17222656-17222726)
chr4 (47-109)||(51469546-51469608)
chr4 (17-62)||(7572741-7572786)
chr4 (22-111)||(27634506-27634595)
[»] chr3 (9 HSPs)
chr3 (15-64)||(41915169-41915218)
chr3 (47-110)||(50057094-50057157)
chr3 (15-44)||(21717406-21717435)
chr3 (47-127)||(42420962-42421042)
chr3 (47-111)||(9264268-9264332)
chr3 (47-111)||(22407623-22407687)
chr3 (47-111)||(37058746-37058810)
chr3 (16-64)||(42420823-42420871)
chr3 (47-111)||(51642610-51642674)
[»] chr7 (4 HSPs)
chr7 (47-111)||(13310400-13310464)
chr7 (100-149)||(22339550-22339599)
chr7 (27-64)||(31257068-31257105)
chr7 (47-111)||(23396674-23396738)
[»] chr5 (8 HSPs)
chr5 (47-111)||(24125127-24125191)
chr5 (22-57)||(24270149-24270184)
chr5 (22-57)||(24346781-24346816)
chr5 (17-95)||(17150239-17150317)
chr5 (47-111)||(2908744-2908808)
chr5 (47-111)||(13413649-13413713)
chr5 (47-111)||(34457161-34457225)
chr5 (47-111)||(40169016-40169080)
[»] chr6 (3 HSPs)
chr6 (47-109)||(11313359-11313421)
chr6 (46-98)||(5557146-5557198)
chr6 (47-111)||(16876985-16877049)
[»] chr1 (4 HSPs)
chr1 (20-66)||(41066942-41066988)
chr1 (47-111)||(15391884-15391948)
chr1 (47-111)||(29273041-29273105)
chr1 (47-111)||(29273200-29273264)
[»] chr2 (2 HSPs)
chr2 (28-108)||(93713-93793)
chr2 (47-111)||(3435461-3435525)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 6028427 - 6028216
Alignment:
Q  17 tgaacatgtatttataagtgggggtaatattcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagcttccgtt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  6028427 tgaacatgtatttataagtgggggtaatattcacctcacaaaccagttgtttaaggatgcgttggatcccaaatttcaatatagtatcagagcttccgtt 6028328  T
Q  117 aagattcattggaccacctactatcatgttttcgttattggatcgagcaattataacctcacattttgattttgtaagaatgtgttaaggccacaaatgc 216  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6028327 aagattcattgggacacctactatcatgttttcgttatcggatcgagcaattataacctcacattttgattttgtaaggatgtgttaaggccacaaatgc 6028228  T
Q  217 tatctgagcaat 228  Q
    ||||||||||||    
T  6028227 tatctgagcaat 6028216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 8084367 - 8084409
Alignment:
Q  22 atgtatttataagtgggggtaatattcacctcacaaaccagtt 64  Q
    ||||||||||||||||||||||   ||||||||||||||||||    
T  8084367 atgtatttataagtgggggtaaacctcacctcacaaaccagtt 8084409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 10989280 - 10989216
Alignment:
Q  47 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 111  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
T  10989280 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 10989216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 43599376 - 43599440
Alignment:
Q  47 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 111  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
T  43599376 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 43599440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 10390504 - 10390450
Alignment:
Q  57 aaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 111  Q
    |||||||| | |||||||| ||| |||||||||||||||||| ||||||||||||    
T  10390504 aaccagttttgtaaggatgagttagaccccaaatttcaacatggtatcagagctt 10390450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 17222726 - 17222656
Alignment:
Q  27 tttataagtgggggtaatattcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaaca 97  Q
    |||||||||||||| |||  ||||||||||| || ||| | |||||||| ||| | |||||||||||||||    
T  17222726 tttataagtgggggcaatcctcacctcacaagccggttttgtaaggatgtgttaggccccaaatttcaaca 17222656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 51469546 - 51469608
Alignment:
Q  47 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagc 109  Q
    |||||| |||| || ||||| |||||||| ||| | |||||||||||||||| ||||||||||    
T  51469546 tcaccttacaagccggttgtgtaaggatgagttaggccccaaatttcaacatggtatcagagc 51469608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 7572786 - 7572741
Alignment:
Q  17 tgaacatgtatttataagtgggggtaatattcacctcacaaaccag 62  Q
    |||||| || |||||||||||||||||| |||||||||||| ||||    
T  7572786 tgaacaagtgtttataagtgggggtaatcttcacctcacaagccag 7572741  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 27634595 - 27634506
Alignment:
Q  22 atgtatttataagtgggggtaatattcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 111  Q
    |||| ||||| |||||||| |||  ||||||||||| || ||| | ||| |||| ||| | ||||||||| |||||| ||||||||||||    
T  27634595 atgtgtttatgagtgggggcaatcctcacctcacaagccggttttgtaacgatgagttaggccccaaattacaacatggtatcagagctt 27634506  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 41915169 - 41915218
Alignment:
Q  15 catgaacatgtatttataagtgggggtaatattcacctcacaaaccagtt 64  Q
    ||||||||||| |||||||||||||| |||  ||||||||||||||||||    
T  41915169 catgaacatgtgtttataagtgggggcaatcctcacctcacaaaccagtt 41915218  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 50057094 - 50057157
Alignment:
Q  47 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagct 110  Q
    |||||| |||| |||||| | |||||||| ||| | |||||||||||||||| |||||||||||    
T  50057094 tcaccttacaagccagttttgtaaggatgagttaggccccaaatttcaacatggtatcagagct 50057157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 21717435 - 21717406
Alignment:
Q  15 catgaacatgtatttataagtgggggtaat 44  Q
    ||||||||||||||||||||||||||||||    
T  21717435 catgaacatgtatttataagtgggggtaat 21717406  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 42420962 - 42421042
Alignment:
Q  47 tcacctcacaaaccagttgtt-taaggatgcgttggaccccaaatttcaacatagtatcagagcttccgttaagattcattg 127  Q
    |||||| ||||||||||| || |||||| ||||| | |||||| ||||||||| || ||||||| ||||||||||| |||||    
T  42420962 tcaccttacaaaccagtttttgtaaggaggcgttaggccccaa-tttcaacatggtttcagagcatccgttaagatccattg 42421042  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 9264332 - 9264268
Alignment:
Q  47 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 111  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
T  9264332 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 9264268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 22407687 - 22407623
Alignment:
Q  47 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 111  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
T  22407687 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 22407623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 37058810 - 37058746
Alignment:
Q  47 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 111  Q
    |||||| ||||||| ||| | |||||||| ||| | ||| |||||||||||| ||||||||||||    
T  37058810 tcaccttacaaaccggttttgtaaggatgagttaggcccaaaatttcaacatggtatcagagctt 37058746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 42420823 - 42420871
Alignment:
Q  16 atgaacatgtatttataagtgggggtaatattcacctcacaaaccagtt 64  Q
    |||||||||| |||||||||||| | ||| ||||||| |||||||||||    
T  42420823 atgaacatgtgtttataagtgggagcaatcttcaccttacaaaccagtt 42420871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 51642674 - 51642610
Alignment:
Q  47 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 111  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
T  51642674 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 51642610  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 13310464 - 13310400
Alignment:
Q  47 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 111  Q
    |||| ||||||||| ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
T  13310464 tcacttcacaaaccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 13310400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 22339599 - 22339550
Alignment:
Q  100 gtatcagagcttccgttaagattcattggaccacctactatcatgttttc 149  Q
    |||||||||| ||||||||||| ||||||||||||| ||| || ||||||    
T  22339599 gtatcagagcctccgttaagatccattggaccacctgctaccaggttttc 22339550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 31257105 - 31257068
Alignment:
Q  27 tttataagtgggggtaatattcacctcacaaaccagtt 64  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  31257105 tttataagtgggggcaatcttcacctcacaaaccagtt 31257068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 23396674 - 23396738
Alignment:
Q  47 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 111  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
T  23396674 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 23396738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 24125127 - 24125191
Alignment:
Q  47 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 111  Q
    |||||| |||| || ||| | |||||||| ||| |||||||||||||||||| ||||||||||||    
T  24125127 tcaccttacaagccggttttgtaaggatgagttagaccccaaatttcaacatggtatcagagctt 24125191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 24270184 - 24270149
Alignment:
Q  22 atgtatttataagtgggggtaatattcacctcacaa 57  Q
    |||||||||||||||||||||||| |||||||||||    
T  24270184 atgtatttataagtgggggtaatactcacctcacaa 24270149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 24346816 - 24346781
Alignment:
Q  22 atgtatttataagtgggggtaatattcacctcacaa 57  Q
    |||||||||||||||||||||||| |||||||||||    
T  24346816 atgtatttataagtgggggtaatactcacctcacaa 24346781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 17150317 - 17150239
Alignment:
Q  17 tgaacatgtatttataagtgggggtaatattcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaa 95  Q
    |||| |||| |||||||||||||| |||  ||||||||| |||||||| | ||||||||  || | |||||||||||||    
T  17150317 tgaaaatgtgtttataagtgggggcaatcctcacctcaccaaccagttttgtaaggatgaattaggccccaaatttcaa 17150239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 2908808 - 2908744
Alignment:
Q  47 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 111  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
T  2908808 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 2908744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 13413649 - 13413713
Alignment:
Q  47 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 111  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
T  13413649 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 13413713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 34457161 - 34457225
Alignment:
Q  47 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 111  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
T  34457161 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 34457225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 40169080 - 40169016
Alignment:
Q  47 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 111  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
T  40169080 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 40169016  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 11313421 - 11313359
Alignment:
Q  47 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagc 109  Q
    |||||| |||| |||||| | |||||||| ||| | |||||||||||||||| ||||||||||    
T  11313421 tcaccttacaagccagttttgtaaggatgagttaggccccaaatttcaacatggtatcagagc 11313359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 5557146 - 5557198
Alignment:
Q  46 ttcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacat 98  Q
    ||||||| |||| | |||| |||||||||| |||||||| |||||||||||||    
T  5557146 ttcaccttacaagctagttttttaaggatgagttggacctcaaatttcaacat 5557198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 16877049 - 16876985
Alignment:
Q  47 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 111  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
T  16877049 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 16876985  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 41066942 - 41066988
Alignment:
Q  20 acatgtatttataagtgggggtaatattcacctcacaaaccagttgt 66  Q
    |||||| ||||||||||| |||||| ||||||||||||||| |||||    
T  41066942 acatgtgtttataagtggaggtaatcttcacctcacaaaccggttgt 41066988  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 15391884 - 15391948
Alignment:
Q  47 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 111  Q
    |||||| |||| |||||| | |||||||| ||  | |||||||||||||||| ||||||||||||    
T  15391884 tcaccttacaagccagttttgtaaggatgagtaaggccccaaatttcaacatggtatcagagctt 15391948  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 29273105 - 29273041
Alignment:
Q  47 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 111  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
T  29273105 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 29273041  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 29273264 - 29273200
Alignment:
Q  47 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 111  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
T  29273264 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 29273200  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 93793 - 93713
Alignment:
Q  28 ttataagtgggggtaatattcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagag 108  Q
    ||||||||||||| |||  ||||||||||| || ||| | | |||||| ||| | || ||||||||||||| |||||||||    
T  93793 ttataagtgggggcaatcctcacctcacaagccggttttgtgaggatgagttaggcctcaaatttcaacatggtatcagag 93713  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 3435525 - 3435461
Alignment:
Q  47 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 111  Q
    |||||| ||||||| ||| | |||||||| ||| | ||||||||| |||||| ||||||||||||    
T  3435525 tcaccttacaaaccggttttgtaaggatgagttaggccccaaattacaacatggtatcagagctt 3435461  T

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