View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18936_high_90 (Length: 237)

Name: NF18936_high_90
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18936_high_90
NF18936_high_90
[»] chr5 (1 HSPs)
chr5 (1-223)||(40883268-40883490)
[»] chr6 (3 HSPs)
chr6 (1-223)||(8891031-8891253)
chr6 (153-223)||(8908666-8908736)
chr6 (24-74)||(18700007-18700057)
[»] scaffold0164 (1 HSPs)
scaffold0164 (24-160)||(12111-12248)
[»] chr3 (2 HSPs)
chr3 (146-220)||(48118342-48118416)
chr3 (26-127)||(48118175-48118282)
[»] chr7 (2 HSPs)
chr7 (146-220)||(10208430-10208504)
chr7 (24-80)||(10208622-10208678)
[»] chr4 (3 HSPs)
chr4 (24-78)||(51035182-51035236)
chr4 (98-160)||(51035121-51035184)
chr4 (146-220)||(51035023-51035097)
[»] chr1 (2 HSPs)
chr1 (24-127)||(33358240-33358349)
chr1 (146-220)||(33357921-33357995)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 40883490 - 40883268
Alignment:
Q  1 aagaataaaaataaagagagtgcatgtacgtgtttctaattccactctttatgatcatcatttgtttaatttttatttttgatggaatcaccatttcttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40883490 aagaataaaaataaagagagtgcatgtacgtgtttctaattccactctttatgatcatcatttgtttaatttttatttttgatggaatcaccatttcttt 40883391  T
Q  101 catgtttctcacaatgttccatgatttcatttttgttccaactgtctttattgttgttctctaaagcaatggttgcttttaaaaattgagaatggaacat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40883390 catgtttctcacaatgttccatgatttcatttttgttccaactgtctttattgttgttctctaaagcaatggttgcttttaaaaattgagaatggaacat 40883291  T
Q  201 ctgtgatttgagcagttacaact 223  Q
    |||||||||||||||||||||||    
T  40883290 ctgtgatttgagcagttacaact 40883268  T

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Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 8891031 - 8891253
Alignment:
Q  1 aagaataaaaataaagagagtgcatgtacgtgtttctaattccactctttatgatcatcatttgtttaatttttatttttgatggaatcaccatttcttt 100  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8891031 aagaataaaaacaaagagagtgcacgtacgtgtttctaattccactctttatgatcatcatttgtttaatttttatttttgagggaatcaccatttcttt 8891130  T
Q  101 catgtttctcacaatgttccatgatttcatttttgttccaactgtctttattgttgttctctaaagcaatggttgcttttaaaaattgagaatggaacat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8891131 catgtttctcacaatgttccatgatttcatttttgttccaactgtctttattgttgttctctaaagcaatggttgcttttaaaaattgagaatggaacat 8891230  T
Q  201 ctgtgatttgagcagttacaact 223  Q
    ||||||||| ||| |||||||||    
T  8891231 ctgtgatttcagcggttacaact 8891253  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 8908666 - 8908736
Alignment:
Q  153 gttgttctctaaagcaatggttgcttttaaaaattgagaatggaacatctgtgatttgagcagttacaact 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  8908666 gttgttctctaaagcaatggttgcttttaaaaattgagaatggaacatctgtgatttcagcggttacaact 8908736  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 18700057 - 18700007
Alignment:
Q  24 atgtacgtgtttctaattccactctttatgatcatcatttgtttaattttt 74  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18700057 atgtacgtgtttctaattccactctttatgatcatcatttgtttcattttt 18700007  T

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Target: scaffold0164 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 12248 - 12111
Alignment:
Q  24 atgtacgtgtttctaattccactctttatgatcatcatttg-tttaatttttatttttgatggaatcaccatttctttcatgtttctcacaatgttccat 122  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||| ||||||  ||||||  |||| |  ||||||||||||||| ||||||| ||||||    
T  12248 atgtaagtgtttctaattccactctttatgatcatcatttgttttcatttttcattttgagtgaataataatttctttcatgtttttcacaatattccat 12149  T
Q  123 gatttcatttttgttccaactgtctttattgttgttct 160  Q
    |||||  ||||  | |||||||||||| ||||||||||    
T  12148 gatttttttttcttcccaactgtctttgttgttgttct 12111  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 48118342 - 48118416
Alignment:
Q  146 ctttattgttgttctctaaagcaatggttgcttttaaaaattgagaatggaacatctgtgatttgagcagttaca 220  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||| ||||| |||||| ||||| ||||||    
T  48118342 ctttattgttgttctctaaagcaatgattgctattaaaaattgagaatgaaacatttgtgatctgagcggttaca 48118416  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 48118175 - 48118282
Alignment:
Q  26 gtacgtgtttctaattccactctttatgatcatcatttg------tttaatttttatttttgatggaatcaccatttctttcatgtttctcacaatgttc 119  Q
    |||||||||||||||||||||| ||| ||||||||||||      ||| |||||||||||||| | ||||| ||| |||||||||||||||||||| |||    
T  48118175 gtacgtgtttctaattccactcattacgatcatcatttgtttcatttttatttttatttttgaggtaatcatcatgtctttcatgtttctcacaatattc 48118274  T
Q  120 catgattt 127  Q
    | ||||||    
T  48118275 cttgattt 48118282  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 10208504 - 10208430
Alignment:
Q  146 ctttattgttgttctctaaagcaatggttgcttttaaaaattgagaatggaacatctgtgatttgagcagttaca 220  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||  ||||| || ||||||||| ||||||    
T  10208504 ctttattgttgttctctaaagcaatgattgctattaaaaattgagaatcaaacatttgcgatttgagcggttaca 10208430  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 10208678 - 10208622
Alignment:
Q  24 atgtacgtgtttctaattccactctttatgatcatcatttgtttaatttttattttt 80  Q
    |||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||    
T  10208678 atgtacgtgtttctaattccactcattacgatcatcatttgtttcatttttattttt 10208622  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 51035236 - 51035182
Alignment:
Q  24 atgtacgtgtttctaattccactctttatgatcatcatttgtttaatttttattt 78  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  51035236 atgtacgtgtttctaattccactctttatgatcatcatttgtttcattttcattt 51035182  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 51035184 - 51035121
Alignment:
Q  98 tttcatgtttctcacaatgttccatgatttcatttttgttc-caactgtctttattgttgttct 160  Q
    ||||||| ||||||||||||||||||||||  ||||| ||| ||||||||||||||||||||||    
T  51035184 tttcatggttctcacaatgttccatgattttttttttcttctcaactgtctttattgttgttct 51035121  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 51035097 - 51035023
Alignment:
Q  146 ctttattgttgttctctaaagcaatggttgcttttaaaaattgagaatggaacatctgtgatttgagcagttaca 220  Q
    |||||||||| |||||||||   ||||||||| ||||||||| ||||||  |||| |||||||||||| ||||||    
T  51035097 ctttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcggttaca 51035023  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 33358349 - 33358240
Alignment:
Q  24 atgtacgtgtttctaattccactctttatgatcatcatttgtttaatttttat------ttttgatggaatcaccatttctttcatgtttctcacaatgt 117  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| ||||||||      |||||| | ||||  ||| |||||||||||||||||||| |    
T  33358349 atgtatgtgtttctaattccactctttacgatcatcatttgtttcatttttatttttatttttgaggtaatcgtcatgtctttcatgtttctcacaatat 33358250  T
Q  118 tccatgattt 127  Q
    ||| ||||||    
T  33358249 tccttgattt 33358240  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 33357995 - 33357921
Alignment:
Q  146 ctttattgttgttctctaaagcaatggttgcttttaaaaattgagaatggaacatctgtgatttgagcagttaca 220  Q
    |||||||||| ||||| ||||||||| |||||  ||||||||||||||| ||||||| |||||||||| ||||||    
T  33357995 ctttattgtttttctcgaaagcaatgattgctgataaaaattgagaatgaaacatctttgatttgagcggttaca 33357921  T

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