View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_high_91 (Length: 237)
Name: NF18936_high_91
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_high_91 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 17232656 - 17232433
Alignment:
| Q |
1 |
caagctctgggatgaacttagaaaggttaccctttcgcctatgattctgttattgaatgtcagggtccatattgtctggaatgtccagacgaccatcctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17232656 |
caagctctgggatgaacttagaaaggttaccctttcgcctatgattctgttattgaatgtcagggtccatattgtctggaatgtccagacaaccatcctc |
17232557 |
T |
|
| Q |
101 |
ctcgccaacatgataaataactcggtatggattcattgtcggattcataatgtcagtgtttttgcttggcaaagagctcccataagatgaccccatagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17232556 |
ctcgccaacatgataaataactcggtatggattcattgtcggattcataatgtcagtgtttttgcttggcaaagagctcccataagatgaccccatagct |
17232457 |
T |
|
| Q |
201 |
taaaacatcacacctataaaatga |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
17232456 |
taaaacatcacacctataaaatga |
17232433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 15007779 - 15007625
Alignment:
| Q |
60 |
tcagggtccatattgtctggaatgtccagacgaccatcctcctcgccaacatgataaataactcggtatggattcattgtcggattcataatgtcagtgt |
159 |
Q |
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|||||| ||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| |||||| | || ||| ||| || |
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| T |
15007779 |
tcaggggccataatgtctggaatgtccagacggccatcctcctcaccaacatgataaataactcgatatagattcact-tc--tttc-------cagggt |
15007690 |
T |
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| Q |
160 |
ttttgcttggcaaagagctcccataagatgaccccatagcttaaaacatcacacctataaaatga |
224 |
Q |
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| T |
15007689 |
tcctgcttggtaaagagctcccataagatgaccccataactaaaaatatcacacctacaaaatga |
15007625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 15021896 - 15021742
Alignment:
| Q |
60 |
tcagggtccatattgtctggaatgtccagacgaccatcctcctcgccaacatgataaataactcggtatggattcattgtcggattcataatgtcagtgt |
159 |
Q |
| |
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|||||| ||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| ||| || | || ||| ||| || |
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| T |
15021896 |
tcaggggccataatgtctggaatgtccagacggccatcctcctcaccaacatgataaataactcgatatagatacact-tc--tttc-------cagggt |
15021807 |
T |
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| Q |
160 |
ttttgcttggcaaagagctcccataagatgaccccatagcttaaaacatcacacctataaaatga |
224 |
Q |
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| T |
15021806 |
tcctgcttggtaaagagctcccataagatgaccccataactaaaaacatcacacctacaaaatga |
15021742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 15029014 - 15028860
Alignment:
| Q |
60 |
tcagggtccatattgtctggaatgtccagacgaccatcctcctcgccaacatgataaataactcggtatggattcattgtcggattcataatgtcagtgt |
159 |
Q |
| |
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|||||| ||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| ||| || | || ||| ||| || |
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| T |
15029014 |
tcaggggccataatgtctggaatgtccagacggccatcctcctcaccaacatgataaataactcgatatagatacact-tc--tttc-------cagggt |
15028925 |
T |
|
| Q |
160 |
ttttgcttggcaaagagctcccataagatgaccccatagcttaaaacatcacacctataaaatga |
224 |
Q |
| |
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| ||||||| ||||||||||||||||||||||||||| || ||||||||||||||| ||||||| |
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| T |
15028924 |
tcctgcttggtaaagagctcccataagatgaccccataactaaaaacatcacacctacaaaatga |
15028860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 1251479 - 1251415
Alignment:
| Q |
71 |
attgtctggaatgtccagacgaccatcctcctcgccaacatgataaataactcggtatggattca |
135 |
Q |
| |
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||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
1251479 |
attgtttggaatgtccagacggccatcctcctcgccaacatgataaataattcggtatgaattca |
1251415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 1251383 - 1251331
Alignment:
| Q |
172 |
aagagctcccataagatgaccccatagcttaaaacatcacacctataaaatga |
224 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||| ||||||| |
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| T |
1251383 |
aagagctcccataagatgacctcatagctaaaaacatcacacctaaaaaatga |
1251331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 23289812 - 23289757
Alignment:
| Q |
1 |
caagctctgggatgaacttagaaaggttaccctttcgcctatgattctgttattga |
56 |
Q |
| |
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|||||||||||||||||||||||||||| | |||||||| |||||||||||||||| |
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| T |
23289812 |
caagctctgggatgaacttagaaaggtttctctttcgcccatgattctgttattga |
23289757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 45204856 - 45204803
Alignment:
| Q |
171 |
aaagagctcccataagatgaccccatagcttaaaacatcacacctataaaatga |
224 |
Q |
| |
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||||||||||||||| |||||||||||||| ||||||||||||||| ||||||| |
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| T |
45204856 |
aaagagctcccataatatgaccccatagctaaaaacatcacacctacaaaatga |
45204803 |
T |
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