View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18936_high_93 (Length: 234)

Name: NF18936_high_93
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18936_high_93
NF18936_high_93
[»] chr5 (6 HSPs)
chr5 (34-115)||(30856272-30856353)
chr5 (142-218)||(26032274-26032350)
chr5 (162-206)||(40971878-40971922)
chr5 (163-206)||(7630624-7630667)
chr5 (124-206)||(756887-756969)
chr5 (142-206)||(38445706-38445770)
[»] chr8 (2 HSPs)
chr8 (124-206)||(15249550-15249632)
chr8 (162-218)||(23757313-23757369)
[»] chr2 (3 HSPs)
chr2 (164-218)||(578237-578291)
chr2 (162-209)||(35665591-35665638)
chr2 (142-218)||(35665353-35665429)
[»] chr4 (4 HSPs)
chr4 (162-206)||(17947292-17947336)
chr4 (162-218)||(24789677-24789733)
chr4 (162-218)||(24818526-24818582)
chr4 (162-214)||(5521240-5521292)
[»] chr3 (4 HSPs)
chr3 (162-206)||(16024810-16024854)
chr3 (162-206)||(33309689-33309733)
chr3 (162-217)||(33309951-33310006)
chr3 (162-206)||(1742007-1742051)
[»] chr1 (3 HSPs)
chr1 (165-209)||(1691332-1691376)
chr1 (163-206)||(33261728-33261771)
chr1 (163-206)||(33281887-33281930)
[»] chr7 (3 HSPs)
chr7 (165-206)||(14584966-14585007)
chr7 (165-206)||(15998836-15998877)
chr7 (142-218)||(30219012-30219088)


Alignment Details
Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 30856353 - 30856272
Alignment:
Q  34 ctttaaaaaatgtttagnnnnnnngtccttactagacataattttatattttcttaacgtttcttgaacataatattcacat 115  Q
    |||||||||||||||||       ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30856353 ctttaaaaaatgtttagttttcttgtccttattggacataattttatattttcttaacgtttcttgaacataatattcacat 30856272  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 26032350 - 26032274
Alignment:
Q  142 aacaaaataaaaaatttaaggaggatgaaaacatctcgttttatattttagggactgaaatcaaatttcgctatatt 218  Q
    |||||||||||||||||   ||||||||||||||   |||| || ||||||||| | |||||||| |||||||||||    
T  26032350 aacaaaataaaaaattttgtgaggatgaaaacattcagtttaattttttagggattaaaatcaaaattcgctatatt 26032274  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 40971922 - 40971878
Alignment:
Q  162 gaggatgaaaacatctcgttttatattttagggactgaaatcaaa 206  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||||    
T  40971922 gaggatgaaaacatctcattttattttttagggactaaaatcaaa 40971878  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 7630624 - 7630667
Alignment:
Q  163 aggatgaaaacatctcgttttatattttagggactgaaatcaaa 206  Q
    |||||||||||||||| |||||| ||||||||||| ||||||||    
T  7630624 aggatgaaaacatctctttttattttttagggactaaaatcaaa 7630667  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 756887 - 756969
Alignment:
Q  124 tggtcattatgaaccagtaacaaaataaaaaatttaaggaggatgaaaacatctcgttttatattttagggactgaaatcaaa 206  Q
    ||||||||||| |||   ||||||| |||||| || | ||||||||||||||  |||||||| |||||| |||| ||||||||    
T  756887 tggtcattatggaccgaaaacaaaacaaaaaaatttatgaggatgaaaacattgcgttttattttttagagactaaaatcaaa 756969  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 38445770 - 38445706
Alignment:
Q  142 aacaaaataaaaaatttaaggaggatgaaaacatctcgttttatattttagggactgaaatcaaa 206  Q
    ||||||| |||||||||   || |||||||||| ||| ||||||||||||| |||| ||||||||    
T  38445770 aacaaaacaaaaaattttgtgacgatgaaaacagctcattttatattttagagactaaaatcaaa 38445706  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 15249550 - 15249632
Alignment:
Q  124 tggtcattatgaaccagtaacaaaataaaaaatttaaggaggatgaaaacatctcgttttatattttagggactgaaatcaaa 206  Q
    ||||||||| | ||||  |||||||||||||||||   ||||||||||||||||| |||||| |||||| |||  ||||||||    
T  15249550 tggtcattaaggaccaaaaacaaaataaaaaattttgtgaggatgaaaacatctcattttattttttagtgacgaaaatcaaa 15249632  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 23757369 - 23757313
Alignment:
Q  162 gaggatgaaaacatctcgttttatattttagggactgaaatcaaatttcgctatatt 218  Q
    ||||||||||||||||| |||||| ||||||||| | |||| ||| || ||||||||    
T  23757369 gaggatgaaaacatctcattttattttttagggattaaaattaaaatttgctatatt 23757313  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 578291 - 578237
Alignment:
Q  164 ggatgaaaacatctcgttttatattttagggactgaaatcaaatttcgctatatt 218  Q
    ||||||||||||||| |||||| ||||||||||| |||||||| || ||||||||    
T  578291 ggatgaaaacatctcattttattttttagggactaaaatcaaaatttgctatatt 578237  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 35665591 - 35665638
Alignment:
Q  162 gaggatgaaaacatctcgttttatattttagggactgaaatcaaattt 209  Q
    ||||||||||||||||| |||||  ||||||||||| |||||||||||    
T  35665591 gaggatgaaaacatctcattttagtttttagggactaaaatcaaattt 35665638  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 35665429 - 35665353
Alignment:
Q  142 aacaaaataaaaaatttaaggaggatgaaaacatctcgttttatattttagggactgaaatcaaatttcgctatatt 218  Q
    |||||||||||||| ||   ||||||||||||||    ||| || ||||||||||| |||||||| |||||||||||    
T  35665429 aacaaaataaaaaaatttgtgaggatgaaaacattcactttaattttttagggactaaaatcaaaattcgctatatt 35665353  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 17947292 - 17947336
Alignment:
Q  162 gaggatgaaaacatctcgttttatattttagggactgaaatcaaa 206  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||||    
T  17947292 gaggatgaaaacatctcattttattttttagggactaaaatcaaa 17947336  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 24789733 - 24789677
Alignment:
Q  162 gaggatgaaaacatctcgttttatattttagggactgaaatcaaatttcgctatatt 218  Q
    ||||||||||||| | |||||||| ||||| ||||| ||||||||||||| ||||||    
T  24789733 gaggatgaaaacaccccgttttattttttaaggactaaaatcaaatttcgttatatt 24789677  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 24818526 - 24818582
Alignment:
Q  162 gaggatgaaaacatctcgttttatattttagggactgaaatcaaatttcgctatatt 218  Q
    ||||||||||||| | |||||||| ||||| ||||| ||||||||||||| ||||||    
T  24818526 gaggatgaaaacaccccgttttattttttaaggactaaaatcaaatttcgttatatt 24818582  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 5521292 - 5521240
Alignment:
Q  162 gaggatgaaaacatctcgttttatattttagggactgaaatcaaatttcgcta 214  Q
    ||||||||||||||||| ||| || |||||| |||| |||||||| |||||||    
T  5521292 gaggatgaaaacatctcatttgattttttagagacttaaatcaaaattcgcta 5521240  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 16024810 - 16024854
Alignment:
Q  162 gaggatgaaaacatctcgttttatattttagggactgaaatcaaa 206  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||||    
T  16024810 gaggatgaaaacatctcattttattttttagggactaaaatcaaa 16024854  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 33309733 - 33309689
Alignment:
Q  162 gaggatgaaaacatctcgttttatattttagggactgaaatcaaa 206  Q
    ||||||||||||||| |||||||| ||||||||||| ||||||||    
T  33309733 gaggatgaaaacatcccgttttattttttagggactaaaatcaaa 33309689  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 33309951 - 33310006
Alignment:
Q  162 gaggatgaaaacatctcgttttatattttagggactgaaatcaaatttcgctatat 217  Q
    ||||||||||||| | |||||||| ||||||||||| |||| ||| ||||||||||    
T  33309951 gaggatgaaaacaccccgttttattttttagggactaaaataaaaattcgctatat 33310006  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 1742051 - 1742007
Alignment:
Q  162 gaggatgaaaacatctcgttttatattttagggactgaaatcaaa 206  Q
    ||||||||||||||||| |||||| ||||||||| | ||||||||    
T  1742051 gaggatgaaaacatctcattttattttttagggattaaaatcaaa 1742007  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 1691376 - 1691332
Alignment:
Q  165 gatgaaaacatctcgttttatattttagggactgaaatcaaattt 209  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||    
T  1691376 gatgaaaacatctcattttacattttagggactaaaatcaaattt 1691332  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 33261771 - 33261728
Alignment:
Q  163 aggatgaaaacatctcgttttatattttagggactgaaatcaaa 206  Q
    |||||||||||||||| |||||| ||||||||||| ||||||||    
T  33261771 aggatgaaaacatctcattttattttttagggactaaaatcaaa 33261728  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 33281930 - 33281887
Alignment:
Q  163 aggatgaaaacatctcgttttatattttagggactgaaatcaaa 206  Q
    |||||||||||||||| |||||| ||||||||||| ||||||||    
T  33281930 aggatgaaaacatctcattttattttttagggactaaaatcaaa 33281887  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 14585007 - 14584966
Alignment:
Q  165 gatgaaaacatctcgttttatattttagggactgaaatcaaa 206  Q
    |||||||||||| |||||||| ||||||||||| ||||||||    
T  14585007 gatgaaaacatcacgttttattttttagggactaaaatcaaa 14584966  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 15998877 - 15998836
Alignment:
Q  165 gatgaaaacatctcgttttatattttagggactgaaatcaaa 206  Q
    |||||||||||| |||||||| ||||||||||| ||||||||    
T  15998877 gatgaaaacatcacgttttattttttagggactaaaatcaaa 15998836  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 30219012 - 30219088
Alignment:
Q  142 aacaaaataaaaaatttaaggaggatgaaaacatctcgttttatattttagggactgaaatcaaatttcgctatatt 218  Q
    |||||||||||||| || | ||||||||||||||   ||||  | || |||||||| |||||||| |||||||||||    
T  30219012 aacaaaataaaaaaatttatgaggatgaaaacattcagtttagttttgtagggactaaaatcaaaattcgctatatt 30219088  T

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