View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_10 (Length: 575)
Name: NF18936_low_10
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 10 - 544
Target Start/End: Complemental strand, 23615756 - 23615219
Alignment:
| Q |
10 |
gcagagagagaggttgcttgcttaggtttcgtcgtctttcaatggttgagtagaatttttaggaataataattgccaaaatggccctctcttttcatctt |
109 |
Q |
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| T |
23615756 |
gcagagagagaggttgcttgcttaggtttcgtcgtctttcaatggttgagtagaatttttaggaataataattgccaaaatggccctctcttttcatctt |
23615657 |
T |
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| Q |
110 |
cctcttgattttggtgcatatgtatacatagagagtgtttaagattgattaacgttgatcaatcttgtcttgggaatgaaagaaagataaggtagtttac |
209 |
Q |
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| T |
23615656 |
cctcttgattttggtgcatatgtatacatagagagtgtttaagattgattaacgttgatcaatcttgtcttgggaatgaaagaaagataaggtagtttac |
23615557 |
T |
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| Q |
210 |
ggcattgaagaaaaaggggggtataaaagtaaataggagtaatgaagagagaaaaaagacatgcggttgggttg---taagattgtaggtgaaggctagg |
306 |
Q |
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| T |
23615556 |
ggcattgaagaaaaaggggggtataaaagtaaataggagtaataaagagagaaaaaagacatgcggttgggttgtactaagattgtaggtgaaggctagg |
23615457 |
T |
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| Q |
307 |
cattgggaattgaagtgagagccgataggctcagatatatgaatatgaagttgaaattgaaacttgaaaattgaaattaagttgaaacgtctagagctat |
406 |
Q |
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| T |
23615456 |
cattgggaattgaagtgagagcagataggctcagatatatgaatatgaagttgaaattgaaacttgaaaattgaaattaagttgaaacgtctagagctat |
23615357 |
T |
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| Q |
407 |
agctagggctctatatttttctcagtcttgatggaggtgactgtgaactccaaggtttcatagtggacattacatggatcatcatagattgtttggcact |
506 |
Q |
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| T |
23615356 |
agctagggctctatatttttctcagtcttgatggaggtgactgtgaactccaaggtttcatagtggacattacatggatcatcatagattgtttggcact |
23615257 |
T |
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| Q |
507 |
gtgtgtttaatgttcaaggatttattgtctgctagata |
544 |
Q |
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| T |
23615256 |
gtgtgtttaatgttcaagtatttattgtctgctagata |
23615219 |
T |
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