View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18936_low_105 (Length: 233)

Name: NF18936_low_105
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18936_low_105
NF18936_low_105
[»] chr3 (10 HSPs)
chr3 (1-218)||(771919-772136)
chr3 (1-216)||(2455287-2455502)
chr3 (133-185)||(9595047-9595099)
chr3 (135-185)||(2474701-2474751)
chr3 (131-181)||(12217595-12217645)
chr3 (135-177)||(13497787-13497829)
chr3 (123-180)||(37753779-37753836)
chr3 (135-185)||(7334686-7334736)
chr3 (138-191)||(2491681-2491734)
chr3 (132-185)||(43991584-43991637)
[»] scaffold0044 (1 HSPs)
scaffold0044 (135-185)||(88706-88756)
[»] scaffold1004 (1 HSPs)
scaffold1004 (131-183)||(1723-1775)
[»] scaffold0760 (1 HSPs)
scaffold0760 (131-183)||(4218-4270)
[»] chr6 (4 HSPs)
chr6 (130-184)||(9820337-9820391)
chr6 (130-184)||(9825999-9826053)
chr6 (138-181)||(4183455-4183498)
chr6 (138-181)||(4744296-4744339)
[»] chr5 (4 HSPs)
chr5 (133-182)||(20292556-20292605)
chr5 (133-182)||(20301004-20301053)
chr5 (133-182)||(20305417-20305466)
chr5 (133-182)||(20309821-20309870)
[»] chr1 (1 HSPs)
chr1 (135-180)||(51858166-51858211)


Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 772136 - 771919
Alignment:
Q  1 atctattttttcaacttctagggtaaagcagacacaactcaattatccaaacagactaatgaatggtcactcttgcgcatactcatgcgacggtatcgtg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  772136 atctattttttcaacttctagggtaaagcagacacaactcaattatccaaacagactaatgaatagtcactcttgcgcatactcatgcgacggtatcgtg 772037  T
Q  101 tgtatcggtaagaccaactttaatagttgcgctgttttgtggaacccttccattcaaaaattcaagatattgcctcctttggaaacttcaccaaacagaa 200  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  772036 tgtatcgctaagaccaactttaatagttgtgctgttttgtggaacccttccattcaaaaattcaagatattgcctcctttggaaacttcaccaaacagaa 771937  T
Q  201 gagcctatatttctttgt 218  Q
    ||||||||||||||||||    
T  771936 gagcctatatttctttgt 771919  T

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Target: chr3; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 2455287 - 2455502
Alignment:
Q  1 atctattttttcaacttctagggtaaagcagacacaactcaattatccaaacagactaatgaatggtcactcttgcgcatactcatgcgacggtatcgtg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||  ||||| |||||||||||| |||||||||||| ||    
T  2455287 atctattttttcaacttctagggtaaagcagacacaactcaattatccaaacgggctaaagaataatcacttttgcgcatactcttgcgacggtatcttg 2455386  T
Q  101 tgtatcggtaagaccaactttaatagttgcgctgttttgtggaacccttccattcaaaaattcaagatattgcctcctttggaaacttcaccaaacagaa 200  Q
    |||||| |||| ||||||| | ||||||| ||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||| || |||||||    
T  2455387 tgtatcagtaataccaactattatagttgtgctgttttgtggaacccttccattggagaattcaagatattgcctcctttggaaacttcgcccaacagaa 2455486  T
Q  201 gagcctatatttcttt 216  Q
    |||||| || ||||||    
T  2455487 gagcctgtagttcttt 2455502  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 9595099 - 9595047
Alignment:
Q  133 tgttttgtggaacccttccattcaaaaattcaagatattgcctcctttggaaa 185  Q
    ||||||||||||||||||||||  |||||| ||| ||||||||||||||||||    
T  9595099 tgttttgtggaacccttccattagaaaatttaagttattgcctcctttggaaa 9595047  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 2474701 - 2474751
Alignment:
Q  135 ttttgtggaacccttccattcaaaaattcaagatattgcctcctttggaaa 185  Q
    ||||||||||||||||||||  |||||| ||| ||||||||||||||||||    
T  2474701 ttttgtggaacccttccattggaaaatttaagttattgcctcctttggaaa 2474751  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 12217595 - 12217645
Alignment:
Q  131 gctgttttgtggaacccttccattcaaaaattcaagatattgcctcctttg 181  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||| |||||    
T  12217595 gctgttttgtggaacccttccattcgaatgttcaagatattgcctactttg 12217645  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 13497787 - 13497829
Alignment:
Q  135 ttttgtggaacccttccattcaaaaattcaagatattgcctcc 177  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  13497787 ttttgtggaacccttccattagaaaattcaagatattgcctcc 13497829  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 37753836 - 37753779
Alignment:
Q  123 atagttgcgctgttttgtggaacccttccattcaaaaattcaagatattgcctccttt 180  Q
    |||||| |||||||||||||||||||| |||| | |||||||| | ||||||||||||    
T  37753836 atagttccgctgttttgtggaaccctttcattaataaattcaaaacattgcctccttt 37753779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 7334736 - 7334686
Alignment:
Q  135 ttttgtggaacccttccattcaaaaattcaagatattgcctcctttggaaa 185  Q
    |||||||||||||||||||| | ||| | ||| ||||||||||||||||||    
T  7334736 ttttgtggaacccttccattaacaaagttaagttattgcctcctttggaaa 7334686  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 2491681 - 2491734
Alignment:
Q  138 tgtggaacccttccattcaaaaattcaagatattgcctcctttggaaacttcac 191  Q
    |||||||||||||||||  ||| || ||| |||||||||||||||||| |||||    
T  2491681 tgtggaacccttccattagaaagtttaagttattgcctcctttggaaaattcac 2491734  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 43991584 - 43991637
Alignment:
Q  132 ctgttttgtggaacccttccattcaaaaattcaagatattgcctcctttggaaa 185  Q
    |||||||||||||||||||||||  || || ||| || ||||||||||||||||    
T  43991584 ctgttttgtggaacccttccattataagatacaatatgttgcctcctttggaaa 43991637  T

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Target: scaffold0044 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 88706 - 88756
Alignment:
Q  135 ttttgtggaacccttccattcaaaaattcaagatattgcctcctttggaaa 185  Q
    ||||||||||||||||||| | |||||||||| ||||||||||||||||||    
T  88706 ttttgtggaacccttccatccgaaaattcaaggtattgcctcctttggaaa 88756  T

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Target: scaffold1004 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 1723 - 1775
Alignment:
Q  131 gctgttttgtggaacccttccattcaaaaattcaagatattgcctcctttgga 183  Q
    ||||||||||||||||||||||||  || ||||||||| ||||||||||||||    
T  1723 gctgttttgtggaacccttccattagaacattcaagattttgcctcctttgga 1775  T

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Target: scaffold0760 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 4218 - 4270
Alignment:
Q  131 gctgttttgtggaacccttccattcaaaaattcaagatattgcctcctttgga 183  Q
    ||||||||||||||||||||||||  || ||||||||| ||||||||||||||    
T  4218 gctgttttgtggaacccttccattagaacattcaagattttgcctcctttgga 4270  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 9820391 - 9820337
Alignment:
Q  130 cgctgttttgtggaacccttccattcaaaaattcaagatattgcctcctttggaa 184  Q
    |||||||||||||||||||||||||  |||||  || ||||||||||||||||||    
T  9820391 cgctgttttgtggaacccttccattagaaaatataacatattgcctcctttggaa 9820337  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 9826053 - 9825999
Alignment:
Q  130 cgctgttttgtggaacccttccattcaaaaattcaagatattgcctcctttggaa 184  Q
    |||||||||||||||||||||||||| |||||  || |||||||| |||||||||    
T  9826053 cgctgttttgtggaacccttccattcgaaaatataacatattgccccctttggaa 9825999  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 4183498 - 4183455
Alignment:
Q  138 tgtggaacccttccattcaaaaattcaagatattgcctcctttg 181  Q
    |||| |||||||||||||  ||||||||||||||||||||||||    
T  4183498 tgtgtaacccttccattcgtaaattcaagatattgcctcctttg 4183455  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 4744339 - 4744296
Alignment:
Q  138 tgtggaacccttccattcaaaaattcaagatattgcctcctttg 181  Q
    |||| |||||||||||||  ||||||||||||||||||||||||    
T  4744339 tgtgtaacccttccattcgtaaattcaagatattgcctcctttg 4744296  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 20292556 - 20292605
Alignment:
Q  133 tgttttgtggaacccttccattcaaaaattcaagatattgcctcctttgg 182  Q
    ||||||||||||||||||||||  ||||||||||| | ||||||||||||    
T  20292556 tgttttgtggaacccttccattagaaaattcaagagagtgcctcctttgg 20292605  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 20301004 - 20301053
Alignment:
Q  133 tgttttgtggaacccttccattcaaaaattcaagatattgcctcctttgg 182  Q
    ||||||||||||||||||||||  ||||||||||| | ||||||||||||    
T  20301004 tgttttgtggaacccttccattagaaaattcaagagagtgcctcctttgg 20301053  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 20305417 - 20305466
Alignment:
Q  133 tgttttgtggaacccttccattcaaaaattcaagatattgcctcctttgg 182  Q
    ||||||||||||||||||||||  ||||||||||| | ||||||||||||    
T  20305417 tgttttgtggaacccttccattagaaaattcaagagagtgcctcctttgg 20305466  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 20309821 - 20309870
Alignment:
Q  133 tgttttgtggaacccttccattcaaaaattcaagatattgcctcctttgg 182  Q
    ||||||||||||||||||||||  ||||||||||| | ||||||||||||    
T  20309821 tgttttgtggaacccttccattagaaaattcaagagagtgcctcctttgg 20309870  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 51858166 - 51858211
Alignment:
Q  135 ttttgtggaacccttccattcaaaaattcaagatattgcctccttt 180  Q
    ||||||| ||||||||||||  ||||||||||||||||||||||||    
T  51858166 ttttgtgtaacccttccattagaaaattcaagatattgcctccttt 51858211  T

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