View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_107 (Length: 230)
Name: NF18936_low_107
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_107 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 23631561 - 23631782
Alignment:
| Q |
1 |
gaaatgacatcatttgtatatctctcttttagaaaatattcactaagatatcatgcatcatgtttctaaattttgatttgattcagtaatatcttaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
23631561 |
gaaatgacatcatttgtatatctctctttttgaaaatattcactaagatatcatgcatcatgtttctaaattttgatttgattaagtaatatcttcaaaa |
23631660 |
T |
|
| Q |
101 |
atttgaattgtatgattcgataaagttaaaacctttaaggaattttatataaaaatagcaagtttgtcatgtaacacttcgttcctatatatggtgttag |
200 |
Q |
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|
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
23631661 |
atttgaattgtataattcgataaagttaaaaccttcaaggaattttatataaaaataacaagtttgtcatctaacacttcgttcctatatattgtgttag |
23631760 |
T |
|
| Q |
201 |
tctaaatcaagtatgatgatgt |
222 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
23631761 |
tctaaatcaagtatgataatgt |
23631782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 18900012 - 18900175
Alignment:
| Q |
9 |
atcatttgtatatctctc-ttttagaaaatattcactaaga-tatcatgcatcatgtttctaaattttgatttgattcagtaatatcttaaaaaatttga |
106 |
Q |
| |
|
||||||||||||| |||| ||||| ||| |||| | ||||| ||| || |||||||| |||| ||| |||||||| ||||||||| | || ||| ||| |
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|
| T |
18900012 |
atcatttgtatatatctcattttataaattatttattaagaatattatacatcatgtcaataaaattttatttgattaagtaatatcatcaagaatatga |
18900111 |
T |
|
| Q |
107 |
attgtatgattcgat-aaagttaaaacctttaaggaattttatataaaaatagcaagtttgtca |
169 |
Q |
| |
|
||| |||| || ||| |||||||||||||| | ||||||||||||||| || |||||| |||| |
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|
| T |
18900112 |
attatatgctttgattaaagttaaaaccttcagagaattttatataaaagtaacaagttagtca |
18900175 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 26468654 - 26468694
Alignment:
| Q |
2 |
aaatgacatcatttgtatatctctcttttagaaaatattca |
42 |
Q |
| |
|
|||||| ||||||| |||||| ||||||||||||||||||| |
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|
| T |
26468654 |
aaatgatatcatttttatatcactcttttagaaaatattca |
26468694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 180
Target Start/End: Original strand, 18785463 - 18785642
Alignment:
| Q |
2 |
aaatgacatcatttgtatatctctcttttagaaaatattcactaaga-tatcatgcatcatgtttctaaattttgatttgattcagtaatatcttaaaaa |
100 |
Q |
| |
|
|||||| |||||||||| || |||||||| |||||||||| ||||| ||| || ||||||||||||||| ||| |||||||| | ||||| ||||||| |
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|
| T |
18785463 |
aaatgatatcatttgtaaatatctctttttgaaaatattctttaagaatattatacatcatgtttctaaaattttatttgattaaacaatatattaaaaa |
18785562 |
T |
|
| Q |
101 |
atttgaattgtatgattcgataaagttaaaacctttaaggaattttatataaaaatagcaagtttgtcatgtaacacttc |
180 |
Q |
| |
|
|| ||||||||||| || ||||||||||||||||| | |||||||||||||| | |||||| |||||| || ||||| |
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|
| T |
18785563 |
atctgaattgtatgctttgataaagttaaaaccttcggtgcattttatataaaaagaacaagttagtcatgaaagacttc |
18785642 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 36332284 - 36332415
Alignment:
| Q |
2 |
aaatgacatcatttgtatatctctcttttagaaaatattcactaag-atatcatgcatcatgtttctaaattttgatttgattcagtaatatcttaaaaa |
100 |
Q |
| |
|
|||||| ||||||| |||||| |||||||||||||||||||||||| |||| || ||||||||||||| |||| ||||| || ||||| |||| | | |
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|
| T |
36332284 |
aaatgatatcatttttatatcactcttttagaaaatattcactaagaatattatacatcatgtttctatatttcaatttgtttatgtaatctcttcgaga |
36332383 |
T |
|
| Q |
101 |
atttgaattgtatgattcgataaagttaaaac |
132 |
Q |
| |
|
|| | ||||||||| |||||||||||||||| |
|
|
| T |
36332384 |
atctaaattgtatgtctcgataaagttaaaac |
36332415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 8050044 - 8050167
Alignment:
| Q |
2 |
aaatgacatcatttgtatatctctcttttagaaaatattcactaaga-tatcatgcatcatgtttctaaattttgatttgattcagtaatatcttaaaaa |
100 |
Q |
| |
|
|||||| ||||||| ||||||| |||||||||| ||||| ||||||| || || || |||||||||| |||| | |||||| |||||| |||| || | |
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|
| T |
8050044 |
aaatgatatcatttttatatctatcttttagaagatatttactaagagtactatacaacatgtttctatatttctagttgattaagtaatctcttcaaga |
8050143 |
T |
|
| Q |
101 |
atttgaattgtatgattcgataaa |
124 |
Q |
| |
|
|| ||||||||||| |||||||| |
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|
| T |
8050144 |
atatgaattgtatgcctcgataaa |
8050167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 32808219 - 32808111
Alignment:
| Q |
2 |
aaatgacatcatttgtatatctctcttttagaaaatattcactaag-atatcatgcatcatgtttctaaattttgatttgattcagtaatatcttaaaaa |
100 |
Q |
| |
|
|||||| ||||||| |||| |||||||| ||||||||||||||||| ||||||| || |||||||||| |||| | |||||| |||||| |||| || | |
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|
| T |
32808219 |
aaatgatatcatttttatacctctcttt-agaaaatattcactaagaatatcatacaacatgtttctatatttcaagttgattaagtaatctcttcaaga |
32808121 |
T |
|
| Q |
101 |
atttgaattg |
110 |
Q |
| |
|
|| ||||||| |
|
|
| T |
32808120 |
atatgaattg |
32808111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 26539778 - 26539870
Alignment:
| Q |
70 |
attttgatttgattcagtaatatcttaaaaaatttgaattgtatgattcgataaagttaaaacctttaaggaattttatataaaaatagcaag |
162 |
Q |
| |
|
||||| |||| ||| |||||| |||| ||| | ||||||||||| || ||||| ||||| |||||| |||||||||||||||||| |||| |
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|
| T |
26539778 |
atttttattttattaagtaatctctttgaaagtctgaattgtatgcctcaataaaattaaatactttaaagaattttatataaaaatatcaag |
26539870 |
T |
|
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