View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_108 (Length: 228)
Name: NF18936_low_108
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_108 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 71 - 210
Target Start/End: Complemental strand, 51303635 - 51303495
Alignment:
| Q |
71 |
tttctccgcaatgttatggcaccacttaggtttcaccaatcttgatttcttctcttctactgatgcttac-agtggcttaaaggggaaactaagggttcc |
169 |
Q |
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| T |
51303635 |
tttctctgctatgttatggcaccacttaggtttcactaatcctgaattcttctcttctattgatgcttacgagtggcttaaagggggaactaagggttcc |
51303536 |
T |
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| Q |
170 |
catgctatcactttttctgtcggagtttggtggtcttggcg |
210 |
Q |
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| T |
51303535 |
catgctatcactttttctgtcggagtttggtgatcttggcg |
51303495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 5204528 - 5204467
Alignment:
| Q |
149 |
aaaggggaaactaagggttcccatgctatcactttttctgtcggagtttggtggtcttggcg |
210 |
Q |
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| T |
5204528 |
aaagggggaactaagggttcccatgctatcactttttatgtcggagtttggtggtcttggcg |
5204467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 210
Target Start/End: Original strand, 9536153 - 9536281
Alignment:
| Q |
83 |
gttatggcaccacttaggtttcaccaatcttgatttcttctcttctactgatgcttac-agtggcttaaaggggaaactaagggttcccatgctatcact |
181 |
Q |
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| T |
9536153 |
gttatggaaccacttaggtttcactaatgcggattctttttcttctattgatgtttacgaatggcttagaaagggagctaagggttcttaggctatcact |
9536252 |
T |
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| Q |
182 |
ttttctgtcggagtttggtggtcttggcg |
210 |
Q |
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| T |
9536253 |
ttctctgttggagtttggtggtcttggcg |
9536281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 35061856 - 35061646
Alignment:
| Q |
1 |
ctccttcggctacttgctctcgctgcggtctttaaaatgagacctttatacattgtgttcgtgactttactttctccgcaatgttatggcaccacttagg |
100 |
Q |
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| T |
35061856 |
ctccttctgctacttgctctcgttgccgtctccagaacgatacctttctccattgtgttcatgactgtactttctccactttgttatggcaccacttagg |
35061757 |
T |
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| Q |
101 |
tttcaccaatcttgatttcttctcttctactgatgctta-cagtggcttaaaggggaaactaagggttcccatgctatcactttttctgtcggagtttgg |
199 |
Q |
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| T |
35061756 |
tttcactaatcatgattttttctcttttatggatgcttatgattggcttaggaggggagctaagggttctcaggctaacactttttctgtgggagtttgg |
35061657 |
T |
|
| Q |
200 |
tggtcttggcg |
210 |
Q |
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| T |
35061656 |
tggtcttggcg |
35061646 |
T |
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