View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18936_low_11 (Length: 573)

Name: NF18936_low_11
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18936_low_11
NF18936_low_11
[»] chr8 (3 HSPs)
chr8 (1-198)||(41311198-41311395)
chr8 (1-187)||(43164876-43165062)
chr8 (477-555)||(41311412-41311490)
[»] chr7 (5 HSPs)
chr7 (1-122)||(30165608-30165729)
chr7 (33-177)||(30125184-30125328)
chr7 (286-377)||(30131424-30131515)
chr7 (318-445)||(30125466-30125593)
chr7 (141-186)||(28180514-28180559)
[»] chr2 (2 HSPs)
chr2 (102-186)||(21430161-21430244)
chr2 (101-181)||(21426470-21426550)
[»] scaffold1051 (1 HSPs)
scaffold1051 (103-171)||(1971-2039)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 41311198 - 41311395
Alignment:
Q  1 ataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattct 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41311198 ataacatccatttcagtcttatcatcataaaccagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattct 41311297  T
Q  101 tataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaactagataccatgtatttttat 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41311298 tataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaaaatctccaagtcaattgaactagataccatgtatttttat 41311395  T

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Target: chr8; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 43164876 - 43165062
Alignment:
Q  1 ataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattct 100  Q
    |||||||| |||||||||| || || ||||| ||||||||||||||||||||||||||||||||| ||||||||| |||| | ||  ||| ||||||||     
T  43164876 ataacatctatttcagtctcataattataaaccagccaatgaatagaaccattcaagaacgacccgactctgggagcaccttcaggtctttcagtattcc 43164975  T
Q  101 tataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaactagatacca 187  Q
     |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| |||||||||||||    
T  43164976 aataaggcaaatcagaatcaaactcaatttgttcccattcattagctctcaatgagaaaatctccaagtcaatcgaactagatacca 43165062  T

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Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 477 - 555
Target Start/End: Original strand, 41311412 - 41311490
Alignment:
Q  477 tagagcttcatgagcataagctttcttgaaaagataagttttcaccgacatgattctatgtgtggatgatgcagcaagt 555  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41311412 tagagcttcatgagcataagctttcttgaaaagataagttttcaccgacatgattctatgtgtggatgatgcagcaagt 41311490  T

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Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 30165729 - 30165608
Alignment:
Q  1 ataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattct 100  Q
    ||||||||||||||||||| || || ||||| ||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| |||||  |||     
T  30165729 ataacatccatttcagtctgataattataaaccagccaatgaatagaaccattgaagaacgacccaactctgggaccaccttcagagcatgcagggttcc 30165630  T
Q  101 tataaggcaaatcagaatcaaa 122  Q
    |||||||||||| |||||||||    
T  30165629 tataaggcaaatgagaatcaaa 30165608  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 33 - 177
Target Start/End: Original strand, 30125184 - 30125328
Alignment:
Q  33 cagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatttgt 132  Q
    ||||||||||||||  |||||||||||| ||||||||||||| |  || |||||||  ||||||||| |||||||||||| |||||||||||||||||      
T  30125184 cagccaatgaatagtcccattcaagaacaacccaactctgggccatccgttagagcgagcagtattcctataaggcaaatgagaatcaaactcaatttcc 30125283  T
Q  133 tcccattgattacctctcaatgagaacatctccaagtcaattgaa 177  Q
    ||||| | |||| ||||||||| ||| ||||||||||||||||||    
T  30125284 tcccacttattagctctcaatgggaaaatctccaagtcaattgaa 30125328  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 286 - 377
Target Start/End: Original strand, 30131424 - 30131515
Alignment:
Q  286 ataggagacagaggtatttgcttgttgacacgagtggatggattccataggtaaaggcatttgtaacagtccaataatagaaagcctctaca 377  Q
    |||||||| ||||||||||| || ||||||| ||||||||||||||||||||| ||||||||||||  ||||||||||||||| ||||||||    
T  30131424 ataggagagagaggtatttgtttattgacaccagtggatggattccataggtagaggcatttgtaaacgtccaataatagaaaccctctaca 30131515  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 318 - 445
Target Start/End: Original strand, 30125466 - 30125593
Alignment:
Q  318 agtggatggattccataggtaaaggcatttgtaacagtccaataatagaaagcctctacacgaacctataatatcaatgcaggattggggaggcacaaaa 417  Q
    ||||||||||||||| ||||| |||||| ||| |||||||||||||||||| ||||||||||||||| |||| | |    | ||| || |||||| ||||    
T  30125466 agtggatggattccaaaggtagaggcatgtgttacagtccaataatagaaaccctctacacgaacctctaattttaggataagatcggtgaggcaaaaaa 30125565  T
Q  418 tcaaggcttagtgaatgataagcagaat 445  Q
     |||||  ||||||||||||||||||||    
T  30125566 ccaaggtgtagtgaatgataagcagaat 30125593  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 28180514 - 28180559
Alignment:
Q  141 attacctctcaatgagaacatctccaagtcaattgaactagatacc 186  Q
    |||| ||||||||||||| ||||| || ||||||||||||||||||    
T  28180514 attagctctcaatgagaaaatctctaattcaattgaactagatacc 28180559  T

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Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 21430244 - 21430161
Alignment:
Q  102 ataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaactagatacc 186  Q
    ||||||||||| |||| ||| |||||||| |||| |||||||| ||||||||||||| ||||| |||||||||||||||||||||    
T  21430244 ataaggcaaatgagaagcaacctcaattttttcc-attgattagctctcaatgagaaaatctctaagtcaattgaactagatacc 21430161  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 21426550 - 21426470
Alignment:
Q  101 tataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaactag 181  Q
    |||||||||||| |||| ||| ||||||||||| ||||| || | ||||||||||||| |||| |||||||||||||||||    
T  21426550 tataaggcaaatgagaagcaacctcaatttgtttccatttatgagctctcaatgagaaaatcttcaagtcaattgaactag 21426470  T

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Target: scaffold1051 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1051
Description:

Target: scaffold1051; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 1971 - 2039
Alignment:
Q  103 taaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtca 171  Q
    |||||||||  |||| ||||||||||||||| ||| | |||| ||||||||||||| ||||||||||||    
T  1971 taaggcaaaggagaaccaaactcaatttgtttccacttattagctctcaatgagaaaatctccaagtca 2039  T

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