View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_110 (Length: 219)
Name: NF18936_low_110
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_110 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 46873325 - 46873123
Alignment:
| Q |
1 |
gtagaattatatgataaaaccaaaaccaataatcaaaatgagttattgttaccttcttcaccatgagcaaagtgacaattctttccaaaggaacaatatc |
100 |
Q |
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| T |
46873325 |
gtagaattatatgataaaaccaaaaccaataatcaaaatgagttattgttaccttcttcaccatgagcaaagtgacaattctttccaaaggaacaatatc |
46873226 |
T |
|
| Q |
101 |
ccgtatccttccacttgagacacagcttagtcttccgataagtgcccctaaattgtgcaggatcttcatgaaggaatttacacttatctccatagggaca |
200 |
Q |
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| T |
46873225 |
ccgtatccttccacttgagacacagcttagtcttccgataagtgcccctaaattgtgcaggatcttcatgaaggaatttacacttatctccatagggaca |
46873126 |
T |
|
| Q |
201 |
ttt |
203 |
Q |
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||| |
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| T |
46873125 |
ttt |
46873123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 2 - 145
Target Start/End: Complemental strand, 46890736 - 46890593
Alignment:
| Q |
2 |
tagaattatatgataaaaccaaaaccaataatcaaaatgagttattgttaccttcttcaccatgagcaaagtgacaattctttccaaaggaacaatatcc |
101 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| |
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| T |
46890736 |
tagaattatatgataaaaccaaaaccaataagcaaaatgagttattgttaccttcttcaccatgagcaaagagacagttcattccaaaggaacaatatcc |
46890637 |
T |
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| Q |
102 |
cgtatccttccacttgagacacagcttagtcttccgataagtgc |
145 |
Q |
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|||| |||||| ||| ||||||||||||||||||||||||||| |
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| T |
46890636 |
tgtatgcttccaattgcgacacagcttagtcttccgataagtgc |
46890593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 46890502 - 46890446
Alignment:
| Q |
146 |
ccctaaattgtgcaggatcttcatgaaggaatttacacttatctccatagggacatt |
202 |
Q |
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||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||| |
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| T |
46890502 |
ccctaaactgtgcaggatcttcatgaaggaatatacagttatctccatatggacatt |
46890446 |
T |
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