View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_111 (Length: 218)
Name: NF18936_low_111
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_111 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 2423560 - 2423381
Alignment:
| Q |
9 |
gacatcatcaagtcattgtatgacatcaaaagttaatgttgtttcataaaagtgtagaccttgaattattttcaaatgatttttatcattgatttgaggt |
108 |
Q |
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| T |
2423560 |
gacatcatcaagtcattgtatgacatcaaaagttaatgttgtttcataaaagtgtaaaccttgaattattttcaaatgatttttatcattgatttgaggt |
2423461 |
T |
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| Q |
109 |
tgaacctatcaaaaactacatcacatcacacaattactatcttaaatcgaaatccttcccaccattcatgtcaacttgag |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2423460 |
tgaacctatcaaaaactacatcacatcacacaattactatcttaaatcgaaatccttcccaccattcatgtcaacttgag |
2423381 |
T |
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