View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_12 (Length: 559)
Name: NF18936_low_12
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 120 - 543
Target Start/End: Complemental strand, 29555332 - 29554909
Alignment:
| Q |
120 |
tcgtgacctgagggtcgtcgacaacaaaatgagcaggtgaagcggtatgaaaaacaccatgacaaccttgaataacatggtcaaatgaaccttcttctaa |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29555332 |
tcgtgacctgagggtcgtcgacaacaaaatgagcaggtgaagcggtatgaaaaacaccatgacaaccttgaataacatggtcaaatgaaccttcttctaa |
29555233 |
T |
|
| Q |
220 |
tagatctgccttgaagagctgcaacctttccttagcaccatcaagtttaagtaaatggtcaaccttattaggattacctatacatattaaaataaaatca |
319 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29555232 |
tagatctgccttgaagaggtgcaacctttccttagcaccatcaagtttaagtaaatggtcaaccttattaggattacctatacatattaaaataaaatca |
29555133 |
T |
|
| Q |
320 |
ctaattcannnnnnnnnnnnggacaagtaaaatcgctcactcattcataatgaaacacaaaataaacatgaaacaaaacattagacaagaagtaagtaat |
419 |
Q |
| |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29555132 |
ctaattcatatttattttttggacaagtaaaatcactcactcattcataatgaaacacaaaataaacatgaaacaaaacattagacaagaagtaagtaat |
29555033 |
T |
|
| Q |
420 |
attggttggtaaatactaacttggatcacgaacagtggctctaacagtgtaaccacgttgaaggagaaatttgacaagccatgaagcaatataacctgaa |
519 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29555032 |
attggttggtaaatactaacttggatcacgaacagtggctctaacagtgtaaccacgttgaaggagaaatttgacaagccatgaagcaatataacctgaa |
29554933 |
T |
|
| Q |
520 |
gcaccagttacacaaactaccttt |
543 |
Q |
| |
|
||||||||||||||||| |||||| |
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| T |
29554932 |
gcaccagttacacaaaccaccttt |
29554909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 125 - 327
Target Start/End: Complemental strand, 29549118 - 29548916
Alignment:
| Q |
125 |
acctgagggtcgtcgacaacaaaatgagcaggtgaagcggtatgaaaaacaccatgacaaccttgaataacatggtcaaatgaaccttcttctaatagat |
224 |
Q |
| |
|
|||||||||||| ||| ||||||||| | |||||||| |||||||| |||||||| || |||||||||||| ||||| ||||||||||| | || || |
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| T |
29549118 |
acctgagggtcggtgacgacaaaatgaacgggtgaagcagtatgaaagacaccatggcatccttgaataacagaatcaaaggaaccttcttcaagtaaat |
29549019 |
T |
|
| Q |
225 |
ctgccttgaagagctgcaacctttccttagcaccatcaagtttaagtaaatggtcaaccttattaggattacctatacatattaaaataaaatcactaat |
324 |
Q |
| |
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||||||| ||||| |||||||||||||| ||||||||||||||||| || || ||||||||||| | |||||||||| |||| |||| ||||||||| || |
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| T |
29549018 |
ctgccttaaagagttgcaacctttcctttgcaccatcaagtttaagcaagtgatcaaccttattggaattacctatagatatgaaaaaaaaatcactcat |
29548919 |
T |
|
| Q |
325 |
tca |
327 |
Q |
| |
|
||| |
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|
| T |
29548918 |
tca |
29548916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 445 - 542
Target Start/End: Complemental strand, 29548840 - 29548743
Alignment:
| Q |
445 |
tcacgaacagtggctctaacagtgtaaccacgttgaaggagaaatttgacaagccatgaagcaatataacctgaagcaccagttacacaaactacctt |
542 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || ||||| ||||||| |||||||||||| ||||||||||||| |||||||| || ||||| |
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| T |
29548840 |
tcacgaacagtggctctaacagtataaccacgttggagaagaaacttgacaacccatgaagcaatgaaacctgaagcacctgttacacacacaacctt |
29548743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 474 - 543
Target Start/End: Complemental strand, 29559194 - 29559125
Alignment:
| Q |
474 |
acgttgaaggagaaatttgacaagccatgaagcaatataacctgaagcaccagttacacaaactaccttt |
543 |
Q |
| |
|
|||||| || ||||| || ||||||||||||||||||||||||||| |||| |||||||| || |||||| |
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|
| T |
29559194 |
acgttggagaagaaacttaacaagccatgaagcaatataacctgaaccacctgttacacacacaaccttt |
29559125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 7e-35; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 143 - 298
Target Start/End: Complemental strand, 26101092 - 26100937
Alignment:
| Q |
143 |
acaaaatgagcaggtgaagcggtatgaaaaacaccatgacaaccttgaataacatggtcaaatgaaccttcttctaatagatctgccttgaagagctgca |
242 |
Q |
| |
|
|||||| || |||||||||| |||||||| ||||||| |||||| | || |||| |||||| ||||||||||| || ||||||||||| ||||| |||| |
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| T |
26101092 |
acaaaacgaacaggtgaagcagtatgaaagacaccatcacaaccctcaacaacagagtcaaaggaaccttcttccaagagatctgccttaaagagttgca |
26100993 |
T |
|
| Q |
243 |
acctttccttagcaccatcaagtttaagtaaatggtcaaccttattaggattacct |
298 |
Q |
| |
|
|||| ||||| ||||||||||||||||| || ||||||||||| |||||||||||| |
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| T |
26100992 |
acctctcctttgcaccatcaagtttaagcaagtggtcaacctttttaggattacct |
26100937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 143 - 298
Target Start/End: Complemental strand, 25933573 - 25933418
Alignment:
| Q |
143 |
acaaaatgagcaggtgaagcggtatgaaaaacaccatgacaaccttgaataacatggtcaaatgaaccttcttctaatagatctgccttgaagagctgca |
242 |
Q |
| |
|
|||||| || |||||||||| |||||||| ||||||| |||||| | || |||| |||||| ||||||||||| || ||||||||||| ||||| |||| |
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|
| T |
25933573 |
acaaaacgaacaggtgaagcagtatgaaagacaccatcacaaccctcaacaacagagtcaaaagaaccttcttccaagagatctgccttaaagagttgca |
25933474 |
T |
|
| Q |
243 |
acctttccttagcaccatcaagtttaagtaaatggtcaaccttattaggattacct |
298 |
Q |
| |
|
|||| ||||| |||||||||||||||| || || |||||||| | || ||||||| |
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|
| T |
25933473 |
acctctcctttgcaccatcaagtttaaccaagtgatcaaccttttcagaattacct |
25933418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 438 - 515
Target Start/End: Complemental strand, 25933311 - 25933234
Alignment:
| Q |
438 |
acttggatcacgaacagtggctctaacagtgtaaccacgttgaaggagaaatttgacaagccatgaagcaatataacc |
515 |
Q |
| |
|
|||||| | ||||||||| ||||| ||||||||||||| |||||||||||| || |||| ||||||||||||| |||| |
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|
| T |
25933311 |
acttgggtgacgaacagttgctctgacagtgtaaccacattgaaggagaaacttaacaatccatgaagcaataaaacc |
25933234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 438 - 543
Target Start/End: Complemental strand, 26100818 - 26100713
Alignment:
| Q |
438 |
acttggatcacgaacagtggctctaacagtgtaaccacgttgaaggagaaatttgacaagccatgaagcaatataacctgaagcaccagttacacaaact |
537 |
Q |
| |
|
|||||| ||||| |||||||||| ||||||||||||||||| || || || ||||||| ||||||||| ||| |||| |||||||| || ||||| || |
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|
| T |
26100818 |
acttgggtcacggacagtggctcggacagtgtaaccacgttggagtaggaacttgacaatccatgaagctataaaaccagaagcacctgtcacacacacc |
26100719 |
T |
|
| Q |
538 |
accttt |
543 |
Q |
| |
|
|||||| |
|
|
| T |
26100718 |
accttt |
26100713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 285
Target Start/End: Complemental strand, 87923 - 87805
Alignment:
| Q |
167 |
tgaaaaacaccatgacaaccttgaataacatggtcaaatgaaccttcttctaatagatctgccttgaagagctgcaacctttccttagcaccatcaagtt |
266 |
Q |
| |
|
||||| ||||||||||| ||||||| |||| ||||| | ||||||||| | ||||| ||||||||| || ||||| || ||||||||||||||||| | |
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|
| T |
87923 |
tgaaagacaccatgacagccttgaacaacagaatcaaaggcaccttcttcaagtagatttgccttgaacagttgcaatctctccttagcaccatcaagct |
87824 |
T |
|
| Q |
267 |
taagtaaatggtcaacctt |
285 |
Q |
| |
|
||| || ||||||||||| |
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|
| T |
87823 |
taaccaagtggtcaacctt |
87805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 438 - 533
Target Start/End: Complemental strand, 87594 - 87499
Alignment:
| Q |
438 |
acttggatcacgaacagtggctctaacagtgtaaccacgttgaaggagaaatttgacaagccatgaagcaatataacctgaagcaccagttacaca |
533 |
Q |
| |
|
||||||||| ||||| |||||| |||||||||| ||||| ||||| || ||| ||| ||||||||||| || ||||||||||| ||||| ||||| |
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|
| T |
87594 |
acttggatcgcgaacggtggctttaacagtgtagccacgatgaagaagcaatcggacgagccatgaagcgatgtaacctgaagcgccagtcacaca |
87499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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