View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_14 (Length: 529)
Name: NF18936_low_14
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 14 - 517
Target Start/End: Complemental strand, 388439 - 387936
Alignment:
| Q |
14 |
aggactatggtttcgctgatataaaaataggattttatagtggtgaccatggtgatggtgagccatttgatggagttcttggtgtgttagctcattcgtt |
113 |
Q |
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| T |
388439 |
aggactatggtttcgctgatataaaaataggattttatagtggtgaccatggtgatggtgagccatttgatggagttcttggtgtgttagctcattcgtt |
388340 |
T |
|
| Q |
114 |
ctcaccggagatcggaagacttcacctcgatgcagccgagacttgggcagttgatttcggtgtaacgaaatcggaggtggcaattgatttagagtcagtt |
213 |
Q |
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| T |
388339 |
ctcaccggagatcggaagacttcacctcgatgcagccgagacttgggcagttgatttcggtgtaacgaaatcggaggtggcaattgatttagagtcagtt |
388240 |
T |
|
| Q |
214 |
gcaacacatgagattggacatttgttgggtttgtcacatagttctttgaaagaggcagtaatgtatccaagtttaaggccaagagataaaagagctgatt |
313 |
Q |
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| T |
388239 |
gcaacacatgagattggacatttgttgggtttgtcacatagttctttgaaagaggcagtaatgtatccaagtttaaggccaagagataaaagagctgatt |
388140 |
T |
|
| Q |
314 |
tgaatattgatgatattaaaggtgtacaatctctttatggttctaatcctaattttagatctcagtggtcatcattggaatctgatatctccacaaatca |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
388139 |
tgaatattgatgatattaaaggtgtacaatctctttatggttctaatcctaattttagatctcagtggtcatcattggaatctgatatctccacaaatca |
388040 |
T |
|
| Q |
414 |
tggtgcaaaatttggagttgacacttacaggttctctatgattgcttccattattgcaattgccctgtattatatataatttgaaccttttttaattata |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
388039 |
tggtgcaaaatttggagttgacacttacaggttctctatgattgcttccattattgcaattgccctgtattatatataatttgaaccttttttaattata |
387940 |
T |
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| Q |
514 |
tatg |
517 |
Q |
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| T |
387939 |
tatg |
387936 |
T |
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