View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_15 (Length: 509)
Name: NF18936_low_15
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 175 - 471
Target Start/End: Complemental strand, 14745278 - 14744977
Alignment:
| Q |
175 |
atatcatcatatgtcccctctgctttgcaaagcatcagatacctcccttccagttacattcagtcaaatcgccgttagaatacaaaacatgtttgtcatg |
274 |
Q |
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| T |
14745278 |
atatcgtcatatgtcccctctgttttgcaaagcatcagatacctcccctccagttacattcagtcaaatcgccgttagaatacaaaacatgtttgtcatg |
14745179 |
T |
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| Q |
275 |
aaacctctgtacttattctctctcaaaacacagccaaaaagaaaccttacgtctttattcttcttcttggtcactcaatgccttcttaactcatctttac |
374 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14745178 |
aaaactctgtacttattctctctcaaaacacagccaaaaagaacccttacgtctttattcttcttcttggtcactcaatgccttcttaactcatctttac |
14745079 |
T |
|
| Q |
375 |
cttaactc----ttgtcgtcgtttctgatcatctccccttaccactcatc-ttgtttttgcccaagtgcattccagctatcattatattcgtcattcttg |
469 |
Q |
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||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14745078 |
cttcactcgttgttgtcgtcgtttctgatcatctccccttaccactcatcattgtttttgcccaagtgcattccagctatcattatattcgtcattcttg |
14744979 |
T |
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| Q |
470 |
cc |
471 |
Q |
| |
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|| |
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| T |
14744978 |
cc |
14744977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 14741875 - 14741773
Alignment:
| Q |
1 |
tttttgtttatgttgttgtagttattgttgatttgtttagccttcactatacag----tacatatacagatgaaaataaatacgtttgaagctatgattt |
96 |
Q |
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||||||| || |||| ||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || |
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| T |
14741875 |
tttttgtctacgttgctgttgttattgttgatttgttcagccttcactatacatacaatacatatacagatgaaaataaataagtttgaagctatgagtt |
14741776 |
T |
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| Q |
97 |
ttg |
99 |
Q |
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||| |
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| T |
14741775 |
ttg |
14741773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 14741678 - 14741622
Alignment:
| Q |
132 |
ggttcaaaacttgtaagtatttatattgggaagtgaagagaaaatatcatcatatgt |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14741678 |
ggttcaaaacttgtaagtatttatattgggaagtgaagagaaaatatcataatatgt |
14741622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 14283665 - 14283718
Alignment:
| Q |
132 |
ggttcaaaacttgtaagtatttatattgggaagtgaagagaaaatatcatcata |
185 |
Q |
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| T |
14283665 |
ggttcaaaacttgtaagtatttatattgggaggtgaagagaaaatatcatcata |
14283718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 15010988 - 15011031
Alignment:
| Q |
145 |
taagtatttatattgggaagtgaagagaaaatatcatcatatgt |
188 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||| |
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| T |
15010988 |
taagtatttatattgggaagtgaagagaaaatttcttcatatgt |
15011031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 14290921 - 14290974
Alignment:
| Q |
132 |
ggttcaaaacttgtaagtatttatattgggaagtgaagagaaaatatcatcatat |
186 |
Q |
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||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |
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| T |
14290921 |
ggttcaaaacttgta-gtatttatattcagaggtgaagagaaaatatcatcatat |
14290974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 23875951 - 23876007
Alignment:
| Q |
132 |
ggttcaaaacttgtaagtatttatattgggaagtgaagagaaaatatcatcatatgt |
188 |
Q |
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||||||||| |||| ||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
23875951 |
ggttcaaaagttgtgagtatttatattgggaagtaaagaaaaaatatcatcatatgt |
23876007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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