View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_16 (Length: 493)
Name: NF18936_low_16
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 93 - 482
Target Start/End: Original strand, 31465188 - 31465577
Alignment:
| Q |
93 |
atgctgaagaataaaaagaggatctttaccagcaatgaatgagttgcatttttctttaacgaatgcaagtaaacatatatagtcaaattctcattgcaaa |
192 |
Q |
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| T |
31465188 |
atgctgaagaataaaaagaggatctttaccagcaatgaatgagttgcatttttctttaacgaatgcaagtatacatatatagtcaaattctcattgcaaa |
31465287 |
T |
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| Q |
193 |
atnnnnnnntatcactcggttatgaaatatagaaaataaagtgaaagcgaccacttttgtgtgtgaatcatagggtttgtactttcgtttctatttcttc |
292 |
Q |
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| T |
31465288 |
ataaaaaaatatcactcggttatgaaatatagaaaataaagtgaaagcgaccacttttgtgtgtgaatcatagggtttgtactttcgtttctatttcttc |
31465387 |
T |
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| Q |
293 |
ggacatcgctatataggacagaagcaaccacttttgcgtgtgaatcataagaaaacaatattttctattcataatatgaaaatatagataaaagcatcca |
392 |
Q |
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| T |
31465388 |
ggacatcgctatataggacagaagcaaccacttttgcgtgtgaatcataagaaaacaatattttctattcataatatgaaaatatagataaaagcatcca |
31465487 |
T |
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| Q |
393 |
taatctacatctctctgacttagtatgagcaataatagttaaaattagnnnnnnnnnnncttccttcccttaacgaatttttagtttcat |
482 |
Q |
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| T |
31465488 |
taatctacatctctctgacttagtatgagcaataatagttaaaattagttttttttttttttccatcccttaacgaatttttagtttcat |
31465577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 275 - 419
Target Start/End: Complemental strand, 31483105 - 31482958
Alignment:
| Q |
275 |
tttcgtttctatttcttcggacatcgctatataggacagaagcaaccacttttgcgtgtgaatcataagaaaacaatattttcta-ttcataatatga-- |
371 |
Q |
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| T |
31483105 |
tttcgtttcttcttctttcgacatccttgtataggacagaagcaaccacttttgtgtgtgaatcataagaaaccaatattttttagttcataatatgatg |
31483006 |
T |
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| Q |
372 |
aaatatagataaaagcatccataatctacatctctctgacttagtatg |
419 |
Q |
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| T |
31483005 |
agatatagataaaagcaaccataaatcacatctctcttacatagtatg |
31482958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 31483586 - 31483511
Alignment:
| Q |
16 |
caatatttgctttcattttcttggagataagttatgagaagcctttcttttactttgggattaaatttaaaagaaa |
91 |
Q |
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| T |
31483586 |
caatgtttgctttcattttctaggagataagatatgagaagcctttctattattttgaaattaaacttaaaggaaa |
31483511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 31465150 - 31465186
Alignment:
| Q |
21 |
tttgctttcattttcttggagataagttatgagaagc |
57 |
Q |
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| T |
31465150 |
tttgctttcattttcttggagataagttatgagaagc |
31465186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 31483484 - 31483436
Alignment:
| Q |
98 |
gaagaataaaaagaggatctttaccagcaatgaatgagttgcatttttc |
146 |
Q |
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| T |
31483484 |
gaagaataaaaagaggatcttcgccaacaatgaatgagttgcatttttc |
31483436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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