View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18936_low_19 (Length: 473)
Name: NF18936_low_19
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_19 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 49951487 - 49951959
Alignment:
| Q |
1 |
ttggagcacttatacgagtaggggaaaaaataaactttgtattaaannnnnnnnnnnnnnnagacttttagatcgctaactacccacttatatttattgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49951487 |
ttggagcacttatacgagtaggggaaaaaataaactttgtattaaattttttgcgttttttagacttttagatcgctaactacccacttatatttattgt |
49951586 |
T |
|
| Q |
101 |
atatgattcattaacaaaagtgacccaagaaaaattgttagcattctccatgtttaaaatgcaaaaggaaggtagaattaaaatggaaaaaatcgagggg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49951587 |
atatgattcattaacaaaagtgacccaagaaaaattgttagcattctccatgtttaaaatgcaaaaggaaggtagaattaaaatggaaaaaatcgagggg |
49951686 |
T |
|
| Q |
201 |
ataggaaagtttcagttgatatcgaacttgtcgtttgttaattcccatagatcccacagctccaagccaaagtagctgagcgtgtgaatgatctcaaaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49951687 |
ataggaaagtttcagttgatatcgaacttgtcgtttgttaattcccatagatcccacagctccaagccaaagtagctgagcgtgtgaatgatctcaaaag |
49951786 |
T |
|
| Q |
301 |
gtgtccttagttactgttgtagtaaaaatttaacataaaaaccaaaataaatccaaaccacattnnnnnnnnnnnnnnatgactcatcatcaccccctta |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
49951787 |
gtgtccttagttactgttgtagtaaaaatttaacataaaaaccaaaataaaaccaaaccacatttctctctctctctcatgactcatcatcaccccctta |
49951886 |
T |
|
| Q |
401 |
gcatctgtcacattttgttatcattgaacagatcaacacaatcacacacagaatctctctctcactctcatta |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49951887 |
gcatctgtcacattttgttatcattgaacagatcaacacaatcacacacagaatctctctctcactctcatta |
49951959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University