View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18936_low_23 (Length: 439)
Name: NF18936_low_23
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 10 - 422
Target Start/End: Complemental strand, 35744150 - 35743726
Alignment:
| Q |
10 |
catcatcaaaaaatggttaaacatgatcaagttatggaagaagtggagttaccactatctcctaaacaatttcaaccaaattctcctaaaccaacacaaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35744150 |
catcatcaaaaaatggttaaacatgatcaagttatggaagaagtggagttaccactatctcctaaacaatttcaaccaaattctcctaaaccaacacaaa |
35744051 |
T |
|
| Q |
110 |
caccttctcatctgcaacaagcatcaatgtctatttcttcatcttctcccccaccccctcctcccctacctgcaccattcacgataatgccnnnnnnngt |
209 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |
|
|
| T |
35744050 |
caccttctcatctacaacaagcatcaatgtctatttcttcatcttctcccccaccccctcctcccctacctgcaccattc---atgatgccaaaaaaagt |
35743954 |
T |
|
| Q |
210 |
acagatattaccaccctcggcacctccaccaccaccgcctccgccacctatgctgcaaccaaatgtggcagtgcccccaccttcaactcct------cct |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
35743953 |
acagatattaccaccctcggcacctccaccaccaccgcctccgccacctatgctgcaaccaaatgtggcagtgcccccaccttcaactcctcctccacct |
35743854 |
T |
|
| Q |
304 |
ccacctccaccagcagcagttaggattccaccacctcctccgccaccaatgtctcttagttccggttcagcgacgatggctgcagcc---------ccac |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
35743853 |
ccacctccaccagcagcagttaggattccaccacctcctccgccaccaatgtctcttagttccggttcagcgacgatgactgcagccccaccacctccac |
35743754 |
T |
|
| Q |
395 |
caccacctatgaaaggtggatcagttcc |
422 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
35743753 |
caccacctatgaaaggtggatcagttcc |
35743726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University