View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_26 (Length: 434)
Name: NF18936_low_26
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 159 - 418
Target Start/End: Complemental strand, 32317029 - 32316770
Alignment:
| Q |
159 |
agctagctcaagaggcattgaaaacgaagcactaaaaggtggtactggagcagcatcgagttcaagactcggaggaaactcagaagctgaaagggaccca |
258 |
Q |
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| T |
32317029 |
agctagctcaagaggcatagaaaacgaagcactaaaaggtggtactggagcagcatcgagttcaagactcggaggaaactcagaagctgaaagggaccca |
32316930 |
T |
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| Q |
259 |
cccatgaaaacaggggaagttgaagtgttgttgttacccataaagaatccattttcaaagcccatttcaaatgggttattggtattattgttgttgaaga |
358 |
Q |
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| T |
32316929 |
cccatgaaaacaggggaagttgaagtgttgttgttacccataaagaatccattttcaaagcccatttcaaatgggttattggtattattgttgttgaaga |
32316830 |
T |
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| Q |
359 |
agtagttgttattgttgtgaaagaaagagtgtggatttgaaattgaatctatggtgtttg |
418 |
Q |
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| T |
32316829 |
agtagttgttattgttgtgaaagaaagagtgtggatttgaaattgaatctatggtgtttg |
32316770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 32317131 - 32317080
Alignment:
| Q |
75 |
agtctccaacctcggaatctccaacgccccacgacgcttctgaaacagcgtc |
126 |
Q |
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| T |
32317131 |
agtctccaacctcggaatctccaacgccccacgacgcttctgaaacagcgtc |
32317080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 263 - 418
Target Start/End: Complemental strand, 8187753 - 8187598
Alignment:
| Q |
263 |
tgaaaacaggggaagttgaagtgttgttgttacccataaagaatccattttcaaagcccatttcaaatgggttattggtattattgttgttgaagaagta |
362 |
Q |
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| T |
8187753 |
tgaaaacaggggaagctgtagtgtttttgtttcccataaagaattcattttcaaactccatttcaaatgggttattgctcttattgttgttgaagaagta |
8187654 |
T |
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| Q |
363 |
gttgttattgttgtgaaagaaagagtgtggatttgaaattgaatctatggtgtttg |
418 |
Q |
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| T |
8187653 |
gttgttattgttgtgaaagaaagagtgtggatttgaaattgaatctatggtgtttg |
8187598 |
T |
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