View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18936_low_32 (Length: 409)
Name: NF18936_low_32
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_32 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 137 - 389
Target Start/End: Original strand, 42156341 - 42156582
Alignment:
| Q |
137 |
tgtagagttaagcacttaccatccaagcatgaagtctagtcctcgttcaacagcgttctgatccaattttttatcagaaagtggaaggaaccaatgagac |
236 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42156341 |
tgtagaattaagcccttaccatccaagcatgaagtctagtcctcgttcaacagcgttctgatccaattttttatcagaaagtggaaggaaccaatgagac |
42156440 |
T |
|
| Q |
237 |
gccaatgttatgcctatcacgcccttttgagattcctgcatatatatagatcatgttttggttattaaatatatatcttgaacttaattaaattaagttc |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
42156441 |
gccaatgttatgcctatcacgcccttttgagattcctgc----atatagatcatgttttggttattaa----atatcttgaact---ttaaattaagttc |
42156529 |
T |
|
| Q |
337 |
ttatctaagttataacaaacctgatacttcttcttgtacacatggacagctgc |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42156530 |
ttatctaagttataacaaacctgatacttcttcttgtacacatggacaactgc |
42156582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 137 - 379
Target Start/End: Complemental strand, 42291045 - 42290807
Alignment:
| Q |
137 |
tgtagagttaagcacttaccatccaagcatgaagtctagtcctcgttcaacagcgttctgatccaattttttatcagaaagtggaaggaaccaatgagac |
236 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |||| || ||||| ||||| ||||||||| |||||| ||||||| |||| |
|
|
| T |
42291045 |
tgtagagttaagcacttaccatccaaacatgaagtctagtcctcgttcagcagctttttgatcgaatttattatcagaatgtggaatgaaccaactagac |
42290946 |
T |
|
| Q |
237 |
gccaatgttatgcctatcacgcccttttgagattcctgcatatatatagatcatgttttggttattaaatatatatcttgaacttaattaaattaagttc |
336 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||| ||||| ||| ||||| |||||||||| || |||||| |||| ||||||||||||| |
|
|
| T |
42290945 |
accaaggttatgcctatcacacccttttgagattcctatatataaatatatcattttttggttat----taggtatctttaact---ttaaattaagttc |
42290853 |
T |
|
| Q |
337 |
ttatctaagtt---ataacaaacctgatacttcttcttgtacacat |
379 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42290852 |
ttatctaagttataataacaaacctgatacttcttcttgtacacat |
42290807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 131 - 389
Target Start/End: Original strand, 42166821 - 42167069
Alignment:
| Q |
131 |
tttcaatgtagagttaagcacttaccatccaagcatgaagtctagtcctcgttcaacagcgttctgatccaattttttatcagaaagtggaaggaaccaa |
230 |
Q |
| |
|
||||||| |||| ||||||||||||||||||| ||||||||| | | || ||| |||| || ||||| ||||| || || |||| ||||| |||||| |
|
|
| T |
42166821 |
tttcaatatagatttaagcacttaccatccaaacatgaagtccacggcccgctcagcagcattttgatcgaatttgttgtcggaaaatggaataaaccaa |
42166920 |
T |
|
| Q |
231 |
tgagacgccaatgttatgcctatcacgcccttttgagattcctgcatatatatagatcatgttttggttattaaatatatatcttgaacttaattaaatt |
330 |
Q |
| |
|
| |||| |||| ||||||||||| || ||||||||||||||||||||||| || || | |||||||||||| ||| ||||||||| |||||| |
|
|
| T |
42166921 |
ttagacaccaaggttatgcctattacacccttttgagattcctgcatataaatc-at--ttttttggttattaggtat----cttgaactt---taaatt |
42167010 |
T |
|
| Q |
331 |
aagttcttatctaagttataacaaacctgatacttcttcttgtacacatggacagctgc |
389 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42167011 |
aagttcttatctaagttataacgaacctgatacttcttcttgtacacatcgacagctgc |
42167069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University