View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18936_low_33 (Length: 399)

Name: NF18936_low_33
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18936_low_33
NF18936_low_33
[»] chr6 (9 HSPs)
chr6 (19-385)||(6200379-6200745)
chr6 (170-285)||(18076116-18076231)
chr6 (162-284)||(6538438-6538555)
chr6 (162-223)||(6536597-6536658)
chr6 (176-260)||(8147647-8147731)
chr6 (165-223)||(6909902-6909960)
chr6 (208-278)||(30536405-30536475)
chr6 (172-278)||(31623487-31623593)
chr6 (162-223)||(8201215-8201276)
[»] chr4 (21 HSPs)
chr4 (115-282)||(54069398-54069564)
chr4 (162-284)||(50681116-50681238)
chr4 (162-273)||(9760372-9760483)
chr4 (164-223)||(53294143-53294202)
chr4 (157-282)||(33586977-33587101)
chr4 (106-284)||(15173275-15173449)
chr4 (106-218)||(21731628-21731739)
chr4 (174-278)||(31076425-31076529)
chr4 (188-282)||(42404051-42404145)
chr4 (162-263)||(3155545-3155646)
chr4 (114-223)||(7839341-7839449)
chr4 (152-236)||(46588090-46588175)
chr4 (162-282)||(54425968-54426086)
chr4 (162-242)||(39691170-39691250)
chr4 (106-260)||(2243994-2244149)
chr4 (162-284)||(22030125-22030246)
chr4 (162-260)||(55414447-55414545)
chr4 (163-284)||(15177230-15177351)
chr4 (163-260)||(20108954-20109051)
chr4 (164-260)||(11347723-11347819)
chr4 (192-284)||(41336682-41336773)
[»] chr2 (17 HSPs)
chr2 (162-284)||(32592508-32592629)
chr2 (111-269)||(43279506-43279661)
chr2 (162-270)||(39073716-39073824)
chr2 (166-284)||(39659540-39659657)
chr2 (163-260)||(28206212-28206309)
chr2 (112-208)||(26202025-26202120)
chr2 (164-251)||(11201411-11201498)
chr2 (201-283)||(15305579-15305661)
chr2 (162-218)||(20952342-20952398)
chr2 (208-280)||(42868534-42868606)
chr2 (201-284)||(42659217-42659300)
chr2 (80-114)||(13325672-13325706)
chr2 (208-284)||(28330372-28330448)
chr2 (201-262)||(42420360-42420421)
chr2 (162-218)||(12289784-12289840)
chr2 (162-210)||(30331755-30331803)
chr2 (162-218)||(33319839-33319895)
[»] chr7 (22 HSPs)
chr7 (162-282)||(420283-420403)
chr7 (165-260)||(30570961-30571056)
chr7 (162-284)||(4970820-4970937)
chr7 (162-256)||(20526395-20526489)
chr7 (162-223)||(46280299-46280360)
chr7 (188-284)||(9210549-9210644)
chr7 (106-209)||(19022557-19022659)
chr7 (190-248)||(21201554-21201612)
chr7 (162-276)||(38138506-38138620)
chr7 (129-223)||(45338431-45338523)
chr7 (111-212)||(45790403-45790502)
chr7 (106-223)||(19302535-19302647)
chr7 (162-242)||(39907766-39907846)
chr7 (150-285)||(48140136-48140269)
chr7 (71-114)||(18765386-18765429)
chr7 (166-216)||(27863756-27863806)
chr7 (162-223)||(34744010-34744071)
chr7 (162-223)||(43694597-43694658)
chr7 (188-285)||(45806530-45806627)
chr7 (164-236)||(8960656-8960728)
chr7 (229-277)||(23989578-23989626)
chr7 (162-218)||(49019855-49019911)
[»] chr1 (20 HSPs)
chr1 (111-223)||(3233992-3234103)
chr1 (157-284)||(42174778-42174903)
chr1 (120-251)||(41184636-41184766)
chr1 (165-263)||(1432457-1432555)
chr1 (129-223)||(17603379-17603472)
chr1 (105-242)||(473127-473262)
chr1 (188-284)||(7861999-7862095)
chr1 (162-242)||(13809961-13810041)
chr1 (162-218)||(49938734-49938790)
chr1 (172-247)||(14576690-14576765)
chr1 (162-284)||(37631586-37631708)
chr1 (205-263)||(45145168-45145226)
chr1 (162-260)||(47432041-47432138)
chr1 (106-223)||(51929511-51929627)
chr1 (162-234)||(1510337-1510409)
chr1 (188-284)||(33541761-33541857)
chr1 (151-223)||(33546469-33546541)
chr1 (162-218)||(36872575-36872631)
chr1 (172-260)||(41505632-41505719)
chr1 (162-210)||(43230797-43230845)
[»] chr3 (21 HSPs)
chr3 (162-284)||(20170444-20170566)
chr3 (188-284)||(24684876-24684972)
chr3 (162-285)||(20880397-20880519)
chr3 (162-217)||(30443881-30443936)
chr3 (162-284)||(39980650-39980772)
chr3 (162-259)||(36631078-36631175)
chr3 (162-242)||(36189529-36189609)
chr3 (157-277)||(4400974-4401092)
chr3 (165-282)||(18405861-18405979)
chr3 (201-274)||(10704639-10704712)
chr3 (162-223)||(47132313-47132374)
chr3 (162-222)||(901907-901967)
chr3 (172-276)||(30956663-30956767)
chr3 (172-276)||(30972475-30972579)
chr3 (163-251)||(49034291-49034379)
chr3 (174-260)||(35959495-35959581)
chr3 (165-263)||(44061053-44061151)
chr3 (172-217)||(12862285-12862330)
chr3 (162-282)||(21335597-21335718)
chr3 (162-223)||(33231710-33231770)
chr3 (177-218)||(47587455-47587496)
[»] chr5 (13 HSPs)
chr5 (188-282)||(6521028-6521121)
chr5 (135-251)||(32009646-32009762)
chr5 (162-284)||(16458006-16458127)
chr5 (162-243)||(16937910-16937991)
chr5 (113-242)||(34102292-34102421)
chr5 (162-285)||(29925761-29925884)
chr5 (151-284)||(10639874-10640007)
chr5 (172-217)||(27298061-27298106)
chr5 (162-284)||(25461013-25461134)
chr5 (227-284)||(7999127-7999184)
chr5 (162-263)||(12425513-12425614)
chr5 (179-223)||(12554501-12554545)
chr5 (162-218)||(43300865-43300921)
[»] chr8 (10 HSPs)
chr8 (188-284)||(38750279-38750375)
chr8 (151-218)||(11861791-11861858)
chr8 (165-284)||(12976134-12976253)
chr8 (111-282)||(16825515-16825684)
chr8 (162-260)||(26771210-26771308)
chr8 (162-217)||(18133644-18133699)
chr8 (100-223)||(37945579-37945700)
chr8 (162-263)||(10114432-10114532)
chr8 (162-223)||(15180523-15180584)
chr8 (152-248)||(29205765-29205861)


Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 385
Target Start/End: Complemental strand, 6200745 - 6200379
Alignment:
Q  19 aattagagaggaaaaattaatatcaaagtgagagaaactaaggatgggttttgattgcttaatttgagcttatcaattgatataagttttgtgagaattt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6200745 aattagagaggaaaaattaatatcaaagtgagagaaactaaggatgggttttgattgcttaatttgagcttatcaattgatataagttttgtgagaattt 6200646  T
Q  119 ttgaaaataccttataacaatttttataaatatttttctaacatattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6200645 ttgaaaataccttataacaatttttataaatatttttctaacatattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaa 6200546  T
Q  219 taattcatcattattttaccttttactataaaagtagcttatacaaacttatgcataagcgcttattgttttaagtactcatcttataaactgtttatcc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6200545 taattcatcattattttaccttttactataaaagtagcttatacaaacttatgcataagcgcttattgttttaagtactcatcttataaactgtttatcc 6200446  T
Q  319 aaacaagccctaatttgcatatacacccattgcataaccttttgtttgctgtctaacttctcttcat 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6200445 aaacaagccctaatttgcatatacacccattgcataaccttttgtttgctgtcaaacttctcttcat 6200379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 285
Target Start/End: Complemental strand, 18076231 - 18076116
Alignment:
Q  170 ttagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaactta 269  Q
    |||||||| |||||||  |||||||||||| ||||||||  || ||||| |||| | | |||||||  ||||| |||||||| || ||||| ||| ||||    
T  18076231 ttagttcttcaatatagcttataaaaacaacttatagcaattagaaaaacaatttaaccttattttctcttttgctataaaaataacttatgcaagctta 18076132  T
Q  270 tgcataagcgcttatt 285  Q
    | |||||| |||||||    
T  18076131 tacataagtgcttatt 18076116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 284
Target Start/End: Complemental strand, 6538555 - 6538438
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttata 261  Q
    |||||| || ||||||||||||||   ||||||||||| |||||||||||||| ||| |||| | ||||||     ||||| ||| |||| || |||||     
T  6538555 tattttaataagttctccaatatagcctataaaaacaacttatagcatatacataaacaatttaacattat-----cttttgctaaaaaactaacttatg 6538461  T
Q  262 caaacttatgcataagcgcttat 284  Q
    ||| ||||| |||||||||||||    
T  6538460 caagcttatacataagcgcttat 6538438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 6536658 - 6536597
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataatt 223  Q
    ||||||||| | ||||||||||||  || ||||||||| |||||||||||||||||| ||||    
T  6536658 tattttcataaattctccaatatagcttctaaaaacaacttatagcatatacaaaaacaatt 6536597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 260
Target Start/End: Complemental strand, 8147731 - 8147647
Alignment:
Q  176 ctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttat 260  Q
    ||||||||||  |||| ||||||  || ||| ||||||||||| |||||| | |||||||| ||||| |||||||| ||||||||    
T  8147731 ctccaatatagcttatgaaaacatcttttagaatatacaaaaacaattcaactttattttatcttttgctataaaaatagcttat 8147647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 6909902 - 6909960
Alignment:
Q  165 tttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataatt 223  Q
    |||||| | |||||||| |||| |||| ||||||| |||||||||||||||||| ||||    
T  6909902 tttcataaattctccaagatatgttatgaaaacaacttatagcatatacaaaaacaatt 6909960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 30536475 - 30536405
Alignment:
Q  208 atatacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaacttatgcataagc 278  Q
    ||||||||||| |||| | |||||||||| | ||| |||||| | |||||||| ||||||||| |||||||    
T  30536475 atatacaaaaacaatttaacattattttatcatttgctataataatagcttatgcaaacttatacataagc 30536405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 278
Target Start/End: Complemental strand, 31623593 - 31623487
Alignment:
Q  172 agttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaacttatg 271  Q
    |||||||||||||| | ||||||||||  |||||||||| |||| |  |||| | | | |||||| ||||| |||||||| ||||| ||  || ||||||    
T  31623593 agttctccaatatagtgtataaaaacagcttatagcatacacaagagcaatttaacgtcattttatctttttctataaaaatagctaatgtaagcttatg 31623494  T
Q  272 cataagc 278  Q
    |||||||    
T  31623493 cataagc 31623487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 8201276 - 8201215
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataatt 223  Q
    ||||||||| |||||||||| |||  |||||||||||| |||||| ||| ||||||| ||||    
T  8201276 tattttcataagttctccaacataacttataaaaacaacttataggatacacaaaaacaatt 8201215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 115 - 282
Target Start/End: Original strand, 54069398 - 54069564
Alignment:
Q  115 atttttgaaaataccttataacaatttttataaatatttttctaacatattttcattagttctccaatatattttataaaaacaagttatagcatataca 214  Q
    ||||||||||| | |||| ||||||||| ||||    |||| |||| |||||||||  ||||| |||||||  |||||||||||| ||||||||||||||    
T  54069398 atttttgaaaacagcttacaacaattttcataagctgtttt-taacttattttcatatgttcttcaatataacttataaaaacaaattatagcatataca 54069496  T
Q  215 aaaataattcatcattattttaccttttactataaaagtagcttatacaaacttatgcataagcgctt 282  Q
    |||| |||| | |||||||||| |||||  ||||||| |||| ||| ||| ||||| |||||| ||||    
T  54069497 aaaacaatttaacattattttatcttttgatataaaaatagcatatgcaagcttatacataagtgctt 54069564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 284
Target Start/End: Original strand, 50681116 - 50681238
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttata 261  Q
    ||||||||| | ||||||||||||  ||||| |||||| |||||||||||||||||| |||| | |||||||||| ||| | |||||||| |||||| |     
T  50681116 tattttcataatttctccaatatagcttatataaacaacttatagcatatacaaaaacaatttaacattattttatcttatcctataaaaatagcttttg 50681215  T
Q  262 caaacttatgcataagcgcttat 284  Q
     || ||||| ||||| |||||||    
T  50681216 taagcttatacataaacgcttat 50681238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 273
Target Start/End: Complemental strand, 9760483 - 9760372
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttata 261  Q
    ||||||||| ||||||||||||||  |||||||||||| |||||||||||  ||||| |||| | | |||||||| ||||| | |||||| || |||||     
T  9760483 tattttcataagttctccaatatagcttataaaaacaacttatagcatattaaaaaagaatttaactttattttatctttttcaataaaaataacttatg 9760384  T
Q  262 caaacttatgca 273  Q
     || ||||||||    
T  9760383 aaagcttatgca 9760372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 53294143 - 53294202
Alignment:
Q  164 ttttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataatt 223  Q
    ||||||| ||||||| |||||| ||||||||||||| |||||||||||||||||| ||||    
T  53294143 ttttcataagttctctaatatagtttataaaaacaacttatagcatatacaaaaacaatt 53294202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 282
Target Start/End: Original strand, 33586977 - 33587101
Alignment:
Q  157 taacatattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagc 256  Q
    |||| ||||||||| |||||||| |||||  ||||||||||||  |||| ||||||||||||   |||| | || ||||| ||||  |||||||| ||||    
T  33586977 taacttattttcataagttctccgatatagcttataaaaacaacctataacatatacaaaaa-cgttcaacgttgttttatctttcgctataaaaatagc 33587075  T
Q  257 ttatacaaacttatgcataagcgctt 282  Q
    |||| ||| ||||| |||||||||||    
T  33587076 ttatgcaagcttatacataagcgctt 33587101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 106 - 284
Target Start/End: Original strand, 15173275 - 15173449
Alignment:
Q  106 tttgtgagaatttttgaaaataccttataacaatttttataaatatttttctaacatattttcattagttctccaatatattttataaaaacaagttata 205  Q
    |||| |||| ||| |||||||| ||||| |||||||| |||| | |||||| ||   ||||||||||||   ||| ||||  |||||||||| | |||||    
T  15173275 tttgggagactttatgaaaatagcttatgacaattttcataagtttttttcaaatg-attttcattagt---ccagtatagcttataaaaaccacttata 15173370  T
Q  206 gcatatacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaacttatgcataagcgcttat 284  Q
    ||| ||| || || |||| ||| |||||||| ||||  |||| |||||||||||| ||| ||||| |||| ||||||||    
T  15173371 gcacatagaagaacaatttatcgttattttatctttagctattaaagtagcttatgcaagcttatacatatgcgcttat 15173449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 21731628 - 21731739
Alignment:
Q  106 tttgtgagaatttttgaaaataccttataacaatttttataaatatttttctaacatattttcattagttctccaatatattttataaaaacaagttata 205  Q
    |||| ||||| || |||||| | ||||| |||||||| |||||  |||||| ||| || |||||| | ||||||||||||  |||||||||||| |||||    
T  21731628 tttgggagaacttatgaaaacagcttatcacaattttcataaacttttttc-aacttactttcataaattctccaatatagcttataaaaacaacttata 21731726  T
Q  206 gcatatacaaaaa 218  Q
    ||| |||||||||    
T  21731727 gcacatacaaaaa 21731739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 174 - 278
Target Start/End: Original strand, 31076425 - 31076529
Alignment:
Q  174 ttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaacttatgca 273  Q
    |||| |||||||  |||||||||||| |||||||||||||||||| | || |   |||||||| ||||| || ||||| |||||||| ||| ||||| ||    
T  31076425 ttcttcaatatagcttataaaaacaatttatagcatatacaaaaacagtttaaacttattttatcttttgctctaaaaatagcttatgcaagcttataca 31076524  T
Q  274 taagc 278  Q
    |||||    
T  31076525 taagc 31076529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 282
Target Start/End: Original strand, 42404051 - 42404145
Alignment:
Q  188 ttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaacttatgcataagcgctt 282  Q
    |||||||||||  ||| ||||| |||||||| |||| | |||||||||| ||||| ||||||||  ||| ||| ||||||||| |||||| ||||    
T  42404051 ttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgctataaaaagagcgtatgcaaacttatacataagtgctt 42404145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 263
Target Start/End: Complemental strand, 3155646 - 3155545
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttata 261  Q
    |||||||||||||||| ||| ||| ||||| ||||||  || |||| | |||||||| |||| | | |||||||| ||||| ||||| || |||||||||    
T  3155646 tattttcattagttcttcaagatagtttatgaaaacagcttgtagcttgtacaaaaacaatttaactttattttatcttttgctatagaaatagcttata 3155547  T
Q  262 ca 263  Q
    ||    
T  3155546 ca 3155545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 7839341 - 7839449
Alignment:
Q  114 aatttttgaaaataccttataacaatttttataaatatttttctaacatattttcattagttctccaatatattttataaaaacaagttatagcatatac 213  Q
    ||||| |||||| | ||||| |||||||| ||||   |||||| ||| ||||||| | |||||| |||| ||  |||||||||||| |||||||||||||    
T  7839341 aatttatgaaaacaacttatgacaattttcataagcttttttc-aacttattttcgtaagttcttcaatctagcttataaaaacaatttatagcatatac 7839439  T
Q  214 aaaaataatt 223  Q
    ||||| ||||    
T  7839440 aaaaacaatt 7839449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 46588090 - 46588175
Alignment:
Q  152 ttttctaacatattttcattagttctccaatatattttat-aaaaacaagttatagcatatacaaaaataattcatcattatttta 236  Q
    ||||| ||| ||||||||| ||||||||||||||  |||| |||||||| |||||||||||| |||||| ||| | | ||||||||    
T  46588090 ttttccaacttattttcataagttctccaatataacttataaaaaacaacttatagcatatataaaaatgatttaccgttatttta 46588175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 282
Target Start/End: Complemental strand, 54426086 - 54425968
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttata 261  Q
    ||||||||| ||||||||||||||  |||||||||||| ||||| |||||  | ||| |||| |   |||||||| ||  | ||| |||||||||||||     
T  54426086 tattttcataagttctccaatatagattataaaaacaacttataacatat--ataaacaatttagtgttattttatctgctgctacaaaagtagcttatg 54425989  T
Q  262 caaacttatgcataagcgctt 282  Q
    ||| ||||| |||||||||||    
T  54425988 caagcttatacataagcgctt 54425968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 39691170 - 39691250
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttacctttt 242  Q
    ||||||| | |||||| |||||||  |||||||||||| |||||||||||||||||  | || | |||||||||| |||||    
T  39691170 tattttcgtaagttcttcaatatagcttataaaaacaacttatagcatatacaaaacaattttaacattattttatctttt 39691250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 260
Target Start/End: Complemental strand, 2244149 - 2243994
Alignment:
Q  106 tttgtgagaatttttgaaaataccttataacaatttttataaatatttttctaacatattttcattagttctccaatata--ttttataaaaacaagtta 203  Q
    |||| |||||||||| |||| | ||||| ||||| || |||||  |||||| | | ||||||||| ||||||||||||||  || ||| ||||||| |||    
T  2244149 tttgggagaatttttaaaaacagcttatgacaatattcataaacttttttc-accttattttcataagttctccaatatagcttatattaaaacaactta 2244051  T
Q  204 tagcat-atacaaaaataattcatcattattttaccttttactataaaagtagcttat 260  Q
    |||||| ||||||||| ||   |  ||||||||| ||||| |||||||| ||||||||    
T  2244050 tagcataatacaaaaacaacgtaatattattttatctttt-ctataaaactagcttat 2243994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 284
Target Start/End: Complemental strand, 22030246 - 22030125
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttata 261  Q
    ||||||||| ||||||| ||| ||  || ||| ||||| ||||||||||||||||||||||  | | |||||||| | ||| ||||| || ||||||||     
T  22030246 tattttcataagttctctaatttaacttgtaagaacaacttatagcatatacaaaaataatataactttattttatccttt-ctatagaaatagcttatg 22030148  T
Q  262 caaacttatgcataagcgcttat 284  Q
      | ||||| |||||||||||||    
T  22030147 tgagcttatacataagcgcttat 22030125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 55414447 - 55414545
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttat 260  Q
    ||||||||| |||||||||| |||  |||| ||||||| ||||||||||| |||||| || | | | |||||||| ||||| | ||| || ||||||||    
T  55414447 tattttcataagttctccaagataacttatgaaaacaatttatagcatatgcaaaaaaaaattaactttattttatcttttccaatagaaatagcttat 55414545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 284
Target Start/End: Original strand, 15177230 - 15177351
Alignment:
Q  163 attttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttatac 262  Q
    |||||||||||||||| | ||||  |||||||||| | |||||||| ||| || || |||| | | |||||||| ||||  |||| ||| |||||||| |    
T  15177230 attttcattagttctctagtatagcttataaaaaccacttatagcacatagaagaacaatttaacgttattttatctttagctattaaaatagcttatgc 15177329  T
Q  263 aaacttatgcataagcgcttat 284  Q
    || ||||| |||| | ||||||    
T  15177330 aagcttatacatacgtgcttat 15177351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 260
Target Start/End: Complemental strand, 20109051 - 20108954
Alignment:
Q  163 attttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttat 260  Q
    |||||||  ||||||| ||||||| |||||||||||  ||||| |||||||||||| || | | | | |||||| ||||| || ||||| ||||||||    
T  20109051 attttcaaaagttctctaatatatcttataaaaacagcttataccatatacaaaaacaacttaacttcattttatcttttcctctaaaactagcttat 20108954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 260
Target Start/End: Complemental strand, 11347819 - 11347723
Alignment:
Q  164 ttttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttat 260  Q
    ||||||| |||||||| ||| || ||||||||| || |||||| |||||||||||| ||  |   |||||||| ||||| |||||||| ||| ||||    
T  11347819 ttttcataagttctccgataaatcttataaaaataacttatagtatatacaaaaatgatctaaagttattttatcttttgctataaaaatagtttat 11347723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 41336773 - 41336682
Alignment:
Q  192 aaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaacttatgcataagcgcttat 284  Q
    |||||||| ||||| |||||||||||| |||| | | |||||||| | ||| |||||||| |||||||| ||| | ||| |||||| ||||||    
T  41336773 aaaaacaatttataacatatacaaaaacaatttaactttattttatc-tttgctataaaaatagcttatgcaagcctatacataagtgcttat 41336682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 162 - 284
Target Start/End: Complemental strand, 32592629 - 32592508
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttata 261  Q
    ||||||||| |||||||||||||   |||||||||||| ||||||| ||||| |||| |||| | |||||||||| ||||| |||||||| ||| ||||     
T  32592629 tattttcataagttctccaatattgcttataaaaacaacttatagcgtatac-aaaacaatttaacattattttatctttttctataaaaatagtttatg 32592531  T
Q  262 caaacttatgcataagcgcttat 284  Q
    ||| ||||| |||||||||||||    
T  32592530 caagcttatacataagcgcttat 32592508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 269
Target Start/End: Original strand, 43279506 - 43279661
Alignment:
Q  111 gagaatttttgaaaataccttataacaatttttataaatatttttctaacatattttcattagttctccaatatattttataaaaacaagttatagcata 210  Q
    |||||||| |||||| | ||||| |||||||| ||||   |||||| ||| ||||||||  ||||||||||||||  |||||||||||| |||||||  |    
T  43279506 gagaatttatgaaaacagcttatgacaattttcataagcttttttc-aacttattttcacaagttctccaatatagcttataaaaacaacttatagc--a 43279602  T
Q  211 tacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaactta 269  Q
    |||||||| ||||   |||||||||| |||||  ||||||| |||||||| ||| ||||    
T  43279603 tacaaaaacaatttcacattattttatcttttgatataaaaatagcttatgcaagctta 43279661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 270
Target Start/End: Original strand, 39073716 - 39073824
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttata 261  Q
    |||||||| |||||||||||||||  |||||||||  | |||||||||||||||||| |||| | | |||||||| |||||| | ||||| |  |||||     
T  39073716 tattttcactagttctccaatatagcttataaaaattacttatagcatatacaaaaacaatttaacgttattttatcttttaatgtaaaaatgtcttatg 39073815  T
Q  262 caaacttat 270  Q
    |||||||||    
T  39073816 caaacttat 39073824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 166 - 284
Target Start/End: Original strand, 39659540 - 39659657
Alignment:
Q  166 ttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaa 265  Q
    ||||| ||||||| ||||||  |||||||||||||||||| |||| ||||||| |||| | | ||||| || |||||  ||||||| |||  ||| ||||    
T  39659540 ttcataagttctctaatatagcttataaaaacaagttataacatagacaaaaacaatttaacgttattgtatcttttgttataaaa-tagtgtatccaaa 39659638  T
Q  266 cttatgcataagcgcttat 284  Q
    ||||| |||||||||||||    
T  39659639 cttatacataagcgcttat 39659657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 260
Target Start/End: Complemental strand, 28206309 - 28206212
Alignment:
Q  163 attttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttat 260  Q
    ||||| || ||||||||||||||  |||||||||||| ||||| |||||| |||||||||| | |||  ||||| |||||  ||||||| ||||||||    
T  28206309 atttttataagttctccaatatagcttataaaaacaatttataacatataaaaaaataatttaacatcgttttatcttttgatataaaaatagcttat 28206212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 26202120 - 26202025
Alignment:
Q  112 agaatttttgaaaataccttataacaatttttataaatatttttctaacatattttcattagttctccaatatattttataaaaacaagttatagca 208  Q
    ||||||| ||| || | ||||| |||||||| ||||   |||||| ||| ||||||||| ||||||||||||||| |||||||||||| ||||||||    
T  26202120 agaatttatgagaacaacttatgacaattttcataagcttttttc-aacttattttcataagttctccaatatatcttataaaaacaacttatagca 26202025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 11201411 - 11201498
Alignment:
Q  164 ttttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaa 251  Q
    ||||||| |||||||||||||| | || |||||||| |||||| ||||||||||| ||||   | |||||||| |||||| |||||||    
T  11201411 ttttcataagttctccaatatagtatacaaaaacaacttatagtatatacaaaaacaattttaccttattttatcttttaatataaaa 11201498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 283
Target Start/End: Complemental strand, 15305661 - 15305579
Alignment:
Q  201 ttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaacttatgcataagcgctta 283  Q
    |||||||| |||||||||||||| | |||||||||| | ||| |||||||| |||||||| ||| ||||| || |||| ||||    
T  15305661 ttatagcaaatacaaaaataatttaacattattttatcatttgctataaaaatagcttatgcaagcttatacacaagcactta 15305579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 20952398 - 20952342
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaa 218  Q
    ||||||||| ||||||||||||||  | |||||||||| |||||||||||| |||||    
T  20952398 tattttcataagttctccaatatagctaataaaaacaacttatagcatataaaaaaa 20952342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 42868534 - 42868606
Alignment:
Q  208 atatacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaacttatgcataagcgc 280  Q
    ||||||||||| |||| | | |||||||| ||||| |||| ||| ||||||||  ||||||||||||||||||    
T  42868534 atatacaaaaacaatttaactttattttatctttttctatgaaaatagcttatgtaaacttatgcataagcgc 42868606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 284
Target Start/End: Original strand, 42659217 - 42659300
Alignment:
Q  201 ttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaacttatgcataagcgcttat 284  Q
    |||||||||||||||||| ||||   | |||||||||| ||| | |||||| ||||||||  || ||||| |||||||||||||    
T  42659217 ttatagcatatacaaaaacaatttcactttattttaccattttccataaaaatagcttatgtaagcttatacataagcgcttat 42659300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 13325706 - 13325672
Alignment:
Q  80 atttgagcttatcaattgatataagttttgtgaga 114  Q
    ||||||||||||||||||||||||||||| |||||    
T  13325706 atttgagcttatcaattgatataagttttatgaga 13325672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 284
Target Start/End: Original strand, 28330372 - 28330448
Alignment:
Q  208 atatacaaaaataattcatcattattttaccttttactataa-aagtagcttatacaaacttatgcataagcgcttat 284  Q
    |||||||||||||||| | | |||||||||||||| ||| || || ||||||| |||| |||||||||| ||||||||    
T  28330372 atatacaaaaataattaaactttattttacctttt-ctaaaacaaatagcttacacaagcttatgcatatgcgcttat 28330448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 42420360 - 42420421
Alignment:
Q  201 ttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttatac 262  Q
    ||||| |||||||||||| |||| | | |||||||| ||||| |||||||| ||||||||||    
T  42420360 ttatatcatatacaaaaacaatttaacgttattttatcttttgctataaaaatagcttatac 42420421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 12289840 - 12289784
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaa 218  Q
    ||||||||| ||||||||||||||  |||||||||||| ||||| ||| ||| ||||    
T  12289840 tattttcataagttctccaatataaattataaaaacaacttataacatgtaccaaaa 12289784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 30331803 - 30331755
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcata 210  Q
    ||||||||| ||||||||||||||| ||||||||| |  ||||||||||    
T  30331803 tattttcataagttctccaatatatcttataaaaatagcttatagcata 30331755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 33319839 - 33319895
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaa 218  Q
    ||||||||| |||||||||| ||| ||||| ||||||  |||||| |||||||||||    
T  33319839 tattttcataagttctccaagatagtttatgaaaacagtttatagtatatacaaaaa 33319895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 162 - 282
Target Start/End: Complemental strand, 420403 - 420283
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttata 261  Q
    ||||||||| ||||||||||||||  |||   |||||| |||||||||||||||||| |||| | |||||||||| ||||| |||||||  ||||||||     
T  420403 tattttcataagttctccaatatagcttacggaaacaacttatagcatatacaaaaacaattgaacattattttatcttttgctataaacatagcttatg 420304  T
Q  262 caaacttatgcataagcgctt 282  Q
    ||| ||||| ||||| |||||    
T  420303 caagcttatacataaacgctt 420283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 165 - 260
Target Start/End: Original strand, 30570961 - 30571056
Alignment:
Q  165 tttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttat 260  Q
    |||||| ||||||||||| ||  ||||||||| |  ||||||||||||||||||||||| | | |||||||||||||  ||||| |||||||||||    
T  30570961 tttcataagttctccaatgtaggttataaaaatagcttatagcatatacaaaaataatttaactttattttacctttcgctatataagtagcttat 30571056  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 284
Target Start/End: Original strand, 4970820 - 4970937
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttata 261  Q
    ||||||||| ||||||| ||||||| ||||||||| || |||||||||||||||||| ||||     |||||||| ||||| ||||| || ||||||||     
T  4970820 tattttcataagttctctaatatatcttataaaaagaacttatagcatatacaaaaacaatt-----ttattttatcttttgctatagaaatagcttatg 4970914  T
Q  262 caaacttatgcataagcgcttat 284  Q
     || ||||| ||||| |||||||    
T  4970915 taagcttatacataaccgcttat 4970937  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 256
Target Start/End: Complemental strand, 20526489 - 20526395
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagc 256  Q
    |||||||||||||||||||| |||  |||| ||||||  ||||||||| |||||| |||||| | | |||||||| ||||| ||||| |||||||    
T  20526489 tattttcattagttctccaaaatagcttatgaaaacagcttatagcatgtacaaacataatttaactttattttatcttttgctatataagtagc 20526395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 46280299 - 46280360
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataatt 223  Q
    ||||||||| ||||||||||||||  |||||||||||  |||||||||||||||||| ||||    
T  46280299 tattttcataagttctccaatatagcttataaaaacagcttatagcatatacaaaaacaatt 46280360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 188 - 284
Target Start/End: Complemental strand, 9210644 - 9210549
Alignment:
Q  188 ttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaacttatgcataagcgcttat 284  Q
    |||| ||||||| |||||||||||| ||||| |||| | ||| ||||||  |||| ||||||||||||||||| ||| ||||| |||||||| ||||    
T  9210644 ttattaaaacaacttatagcatata-aaaaagaatttaacatcattttatttttttctataaaagtagcttatgcaagcttatacataagcgattat 9210549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 19022557 - 19022659
Alignment:
Q  106 tttgtgagaatttttgaaaataccttataacaatttttataaatatttttctaacatattttcattagttctccaatatattttataaaaacaagttata 205  Q
    |||| |||||||| |||||| | ||||| |||||||| |||| |  | ||| ||| ||||||||| ||||||||||||||  |||||||||||| |||||    
T  19022557 tttgggagaatttatgaaaacaacttatgacaattttcataagttgtcttc-aacttattttcataagttctccaatatagcttataaaaacaacttata 19022655  T
Q  206 gcat 209  Q
    ||||    
T  19022656 gcat 19022659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 21201612 - 21201554
Alignment:
Q  190 ataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactata 248  Q
    |||||||||||||||||||||||| ||||||||| | | |||||||| |||| ||||||    
T  21201612 ataaaaacaagttatagcatatacgaaaataatttaacgttattttatctttaactata 21201554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 276
Target Start/End: Original strand, 38138506 - 38138620
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttata 261  Q
    ||||||||| |||||  |||||||  | |||||||||| |||||||||||||||||  |||  | | ||| |||| ||| |||||||||| ||||||||     
T  38138506 tattttcataagttcgtcaatatagctaataaaaacaacttatagcatatacaaaatcaatgtaacgttactttatcttatactataaaaatagcttatc 38138605  T
Q  262 caaacttatgcataa 276  Q
    ||| ||||| |||||    
T  38138606 caaccttatacataa 38138620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 45338523 - 45338431
Alignment:
Q  129 cttataacaatttttataaatatttttctaacatattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataatt 223  Q
    ||||| ||||||||||| | | |||||| ||| ||||||||| ||||||||||||||  ||| |||||||| ||| |||||||||||||| ||||    
T  45338523 cttatgacaatttttattagtttttttc-aacttattttcatcagttctccaatatagctta-aaaaacaacttacagcatatacaaaaacaatt 45338431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 45790403 - 45790502
Alignment:
Q  111 gagaatttttgaaaataccttataacaatttttataaatatttttctaacatattttcattagttctccaatatattttataaaaacaagttatagcata 210  Q
    ||||| || |||||||| ||||| |||||||||| |||  |||||| | | ||||||||| |||| ||||||||| ||||||||||||| ||||||| ||    
T  45790403 gagaacttatgaaaataacttatgacaattttta-aaagctttttc-agcttattttcataagttatccaatatagtttataaaaacaacttatagctta 45790500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 19302535 - 19302647
Alignment:
Q  106 tttgtgagaatttttgaaaataccttataacaatttttataaatatttttctaacatattttcattagttctccaatatattttataaaaacaagttata 205  Q
    |||| |||||||| |||||| | ||||| |||||||| |||||  |||||| ||| ||||||||| ||||||    ||||  |||||||||||| |||||    
T  19302535 tttgggagaatttatgaaaacagcttatgacaattttcataaacttttttc-aacttattttcataagttct----tatagcttataaaaacaacttata 19302629  T
Q  206 gcatatacaaaaataatt 223  Q
     |||||||||||| ||||    
T  19302630 acatatacaaaaacaatt 19302647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 39907846 - 39907766
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttacctttt 242  Q
    ||||||||||||||||| || ||| ||||| ||||||  ||||||| |||||||||| |||| | | ||||||||| ||||    
T  39907846 tattttcattagttctctaagatagtttatgaaaacagtttatagcttatacaaaaacaatttaaccttattttacttttt 39907766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 285
Target Start/End: Complemental strand, 48140269 - 48140136
Alignment:
Q  150 atttttctaacatattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataa 249  Q
    |||||| ||| || ||||||| |||| ||||||||   ||| |||||||| |||||||||||  ||||| |||  |   |||||||| |||||  |||||    
T  48140269 atttttataagattttttcataagttatccaatattaattagaaaaacaacttatagcatattgaaaaacaatctag--ttattttatcttttgttataa 48140172  T
Q  250 aagtagcttatacaaacttatgcataagcgcttatt 285  Q
    || |||||||| ||| ||||| ||||||||||||||    
T  48140171 aaatagcttatgcaagcttatacataagcgcttatt 48140136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 18765429 - 18765386
Alignment:
Q  71 gattgcttaatttgagcttatcaattgatataagttttgtgaga 114  Q
    |||||||| ||||||||||||| ||||| |||||||||||||||    
T  18765429 gattgctttatttgagcttatctattgacataagttttgtgaga 18765386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 27863756 - 27863806
Alignment:
Q  166 ttcattagttctccaatatattttataaaaacaagttatagcatatacaaa 216  Q
    ||||| ||||||| |||||| ||||| ||||||| ||||||||||||||||    
T  27863756 ttcataagttctctaatatagtttattaaaacaacttatagcatatacaaa 27863806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 34744071 - 34744010
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataatt 223  Q
    |||||| || ||||||||||||||  |||| ||||||| ||||| |||||||||||| ||||    
T  34744071 tatttttataagttctccaatatagcttatgaaaacaacttataccatatacaaaaacaatt 34744010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 43694597 - 43694658
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataatt 223  Q
    ||||||||| |||||| | |||||  |||||||||||  |||||||||||||||||| ||||    
T  43694597 tattttcataagttcttcgatatagcttataaaaacagcttatagcatatacaaaaacaatt 43694658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 285
Target Start/End: Original strand, 45806530 - 45806627
Alignment:
Q  188 ttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaacttatgcataagcgcttatt 285  Q
    |||||||||||| ||||||||  || ||||| |||| | | |||||||  ||||| |||||||  |||||||| ||| ||||| |||||| |||||||    
T  45806530 ttataaaaacaacttatagcaattagaaaaacaatttaacgttattttctcttttgctataaacatagcttatgcaagcttatacataagtgcttatt 45806627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 8960656 - 8960728
Alignment:
Q  164 ttttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattatttta 236  Q
    ||||| ||||||||| |||||| ||||||||||| | | ||| |||||||||||| |||| | | ||||||||    
T  8960656 ttttctttagttctctaatatagtttataaaaactactcataacatatacaaaaacaatttaactttatttta 8960728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 23989578 - 23989626
Alignment:
Q  229 ttattttaccttttactataaaagtagcttatacaaacttatgcataag 277  Q
    |||||||| |||||||||||||| ||| |||| ||||||||| ||||||    
T  23989578 ttattttatcttttactataaaaatagtttatgcaaacttatacataag 23989626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 49019911 - 49019855
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaa 218  Q
    ||||||||| |||||| |||||||  ||||||||| |  ||||||||||||||||||    
T  49019911 tattttcataagttctacaatataacttataaaaatagcttatagcatatacaaaaa 49019855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 3233992 - 3234103
Alignment:
Q  111 gagaatttttgaaaataccttataacaatttttataaatatttttctaacatattttcattagttctccaatatattttataaaaacaagttatagcata 210  Q
    ||||| || |||||| | ||||||||| |||| |||| | |||||||| | ||||||||| ||||||||||||||  |||||||||||| ||||||||||    
T  3233992 gagaacttatgaaaacaacttataacagttttcataagtttttttcta-cttattttcataagttctccaatatagcttataaaaacaacttatagcata 3234090  T
Q  211 tacaaaaataatt 223  Q
    |||||||| ||||    
T  3234091 tacaaaaacaatt 3234103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 157 - 284
Target Start/End: Complemental strand, 42174903 - 42174778
Alignment:
Q  157 taacatattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagc 256  Q
    |||| ||||||||| ||||||||||||||  |||||||||||| |||||||||||||||||  | || | ||||| |||| |||||  ||||||| ||||    
T  42174903 taacttattttcataagttctccaatataacttataaaaacaacttatagcatatacaaaa--actttaacattactttatcttttgatataaaaatagc 42174806  T
Q  257 ttatacaaacttatgcataagcgcttat 284  Q
     ||| ||| ||||| ||||||| |||||    
T  42174805 ctatgcaagcttatacataagcccttat 42174778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 120 - 251
Target Start/End: Original strand, 41184636 - 41184766
Alignment:
Q  120 tgaaaataccttataacaatttttataaatatttttctaacatattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaat 219  Q
    |||||||| ||||| |||||||| |||| | |||||| ||| ||||||||| |||| ||||||||  | ||||||| ||| |||||  |||||||||||     
T  41184636 tgaaaatagcttatgacaattttcataagtttttttc-aacttattttcataagttttccaatatggtatataaaaccaaattataatatatacaaaaac 41184734  T
Q  220 aattcatcattattttaccttttactataaaa 251  Q
    |||| | |||||||||| ||||| ||||||||    
T  41184735 aatttaacattattttatcttttgctataaaa 41184766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 165 - 263
Target Start/End: Complemental strand, 1432555 - 1432457
Alignment:
Q  165 tttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttataca 263  Q
    |||||| |||||||||| ||| ||||| ||||||| ||||||| |||| ||||| |||| | |  ||||||| ||||||||||| || |||||||||||    
T  1432555 tttcataagttctccaagatagtttatgaaaacaatttatagcttataaaaaaacaattgaactctattttatcttttactatagaaatagcttataca 1432457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 17603379 - 17603472
Alignment:
Q  129 cttataacaatttttataaatatttttctaacatattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataatt 223  Q
    ||||| |||||||| |||||  |||| | ||| ||||||||  ||||||||||||||  |||||||||||| |||||||||||||||||| ||||    
T  17603379 cttatgacaattttcataaactttttac-aacttattttcagaagttctccaatatagcttataaaaacaacttatagcatatacaaaaacaatt 17603472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 242
Target Start/End: Complemental strand, 473262 - 473127
Alignment:
Q  105 ttttgtgagaatttttgaaaataccttataacaatttttataaatatttttctaacatattttcattagttctccaatatattttataaaaacaagttat 204  Q
    ||||| ||||| || |||||| | |||||| ||||||| ||||   |||||| ||| ||||||||| |||||||||||| |  |||||||||||| ||||    
T  473262 ttttgggagaacttatgaaaaaagcttata-caattttcataagcttttttc-aacttattttcataagttctccaatagaacttataaaaacaacttat 473165  T
Q  205 agcatatacaaaaataattcatcattattttacctttt 242  Q
    |||||| || |||| |||| | | ||||||||||||||    
T  473164 agcatacacgaaaacaatttaactttattttacctttt 473127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 188 - 284
Target Start/End: Complemental strand, 7862095 - 7861999
Alignment:
Q  188 ttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaacttatgcataagcgcttat 284  Q
    ||||| |||||  |||||||||| ||||||| |||| | ||| |||||| ||||| |||||||| ||||||||  || |||||||||||| ||||||    
T  7862095 ttatagaaacagcttatagcatagacaaaaacaatttaccatcattttatctttttctataaaaatagcttatcaaagcttatgcataagagcttat 7861999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 13810041 - 13809961
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttacctttt 242  Q
    ||||||||  ||||||| |||||| |||||||||||||  ||||||||||||||||| |||| | | |||||||| |||||    
T  13810041 tattttcacaagttctctaatatagtttataaaaacaatatatagcatatacaaaaacaatttaactttattttatctttt 13809961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 49938790 - 49938734
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaa 218  Q
    ||||||||| ||||||| ||||||  |||||||||||| ||||| ||||||||||||    
T  49938790 tattttcataagttctctaatatagcttataaaaacaacttataacatatacaaaaa 49938734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 14576690 - 14576765
Alignment:
Q  172 agttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactat 247  Q
    ||||||| ||||||  ||||||||| || |||||||||||||||||| |||| | | |||||||| | ||||||||    
T  14576690 agttctctaatatagcttataaaaaaaaattatagcatatacaaaaacaatttaactttattttatcctttactat 14576765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 284
Target Start/End: Original strand, 37631586 - 37631708
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttata 261  Q
    ||||||||| ||||||||||||||  ||| |||||||  | ||| |||| ||||||| |||| | | | |||||| ||||  |||||||  ||||||||     
T  37631586 tattttcataagttctccaatatagcttacaaaaacagctaatatcatacacaaaaacaatttagcttcattttatctttctctataaagatagcttatg 37631685  T
Q  262 caaacttatgcataagcgcttat 284  Q
     || |||||| ||||||||||||    
T  37631686 taagcttatgtataagcgcttat 37631708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 45145226 - 45145168
Alignment:
Q  205 agcatatacaaaaataattcatcattattttaccttttactataaaagtagcttataca 263  Q
    |||||||||||||| |||| |  ||||||||| ||||| |||||||| |||||||||||    
T  45145226 agcatatacaaaaacaatttaatattattttatcttttgctataaaaatagcttataca 45145168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 47432138 - 47432041
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttat 260  Q
    ||||||||| | |||| |||||||  |||||||| ||  ||||||||||| |||||| |||| | | |||||||| ||||| |||||||| ||||||||    
T  47432138 tattttcataaattcttcaatataacttataaaa-caccttatagcatattcaaaaacaatttaactttattttatctttttctataaaaatagcttat 47432041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 51929511 - 51929627
Alignment:
Q  106 tttgtgagaatttttgaaaataccttataacaatttttataaatatttttctaacatattttcattagttctccaatatattttataaaaacaagttata 205  Q
    |||| |||||||  |||||| | ||||| |||||||| ||||   |||||| ||| ||||| ||| |||||||||||||| ||||||||||||  |||      
T  51929511 tttgggagaattcatgaaaacagcttatgacaattttcataagcttttttc-aacttatttccataagttctccaatatagtttataaaaacagcttaag 51929609  T
Q  206 gcatatacaaaaataatt 223  Q
    ||||||| ||||| ||||    
T  51929610 gcatatataaaaacaatt 51929627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 1510337 - 1510409
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattt 234  Q
    ||||||| | |||||||||||| |  |||||||||||| ||||| | |||||||||| |||| | ||||||||    
T  1510337 tattttcgtaagttctccaatagagcttataaaaacaacttataacctatacaaaaacaattgaacattattt 1510409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 284
Target Start/End: Original strand, 33541761 - 33541857
Alignment:
Q  188 ttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaacttatgcataagcgcttat 284  Q
    |||||||||||| ||| ||||| |||||||| |||| | ||| ||| || | ||  |||||||| || ||||| ||| ||||| |||||||||||||    
T  33541761 ttataaaaacaacttagagcatgtacaaaaagaatttaacatcattatatccttagctataaaaatatcttattcaagcttatacataagcgcttat 33541857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 33546469 - 33546541
Alignment:
Q  151 tttttctaacatattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataatt 223  Q
    |||||| ||| ||||||||| || ||| |||| ||  |||||||||||| ||| |||||||||||||| ||||    
T  33546469 tttttcaaacgtattttcataagctcttcaatctagcttataaaaacaacttagagcatatacaaaaagaatt 33546541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 36872631 - 36872575
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaa 218  Q
    |||||||||||||||| |||| ||  || ||||||||| || |||||||||||||||    
T  36872631 tattttcattagttctacaatgtaccttgtaaaaacaacttgtagcatatacaaaaa 36872575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 260
Target Start/End: Complemental strand, 41505719 - 41505632
Alignment:
Q  172 agttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttat 260  Q
    ||||||||||||||  |||||||||||  ||||| ||||||| |||| |||| | | ||| ||||| |||| |||||||| ||||||||    
T  41505719 agttctccaatatagcttataaaaacagcttataacatatacgaaaacaatttaactttaatttacgtttt-ctataaaaatagcttat 41505632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 43230797 - 43230845
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcata 210  Q
    ||||||||||||||||||||||||   ||||| ||||| ||||||||||    
T  43230797 tattttcattagttctccaatatagcctataagaacaacttatagcata 43230845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 284
Target Start/End: Complemental strand, 20170566 - 20170444
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttata 261  Q
    ||||||||||||||||| || |||  || ||||||||| |||||||||||||||||| |||| | |||||||||| ||||| |  ||||| |||||| |     
T  20170566 tattttcattagttctcaaaaataacttgtaaaaacaacttatagcatatacaaaaacaatttaacattattttatcttttgcagtaaaaatagcttgtg 20170467  T
Q  262 caaacttatgcataagcgcttat 284  Q
    ||| || || |||||||||||||    
T  20170466 caagctgatacataagcgcttat 20170444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 284
Target Start/End: Original strand, 24684876 - 24684972
Alignment:
Q  188 ttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaacttatgcataagcgcttat 284  Q
    |||||||| ||| |||||||||||||||||| |||| |   |||||||| ||||| |||||||| ||||||||  ||||||||||| ||||||||||    
T  24684876 ttataaaagcaacttatagcatatacaaaaacaattaaaatttattttatctttttctataaaaatagcttatgtaaacttatgcaaaagcgcttat 24684972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 285
Target Start/End: Complemental strand, 20880519 - 20880397
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttata 261  Q
    ||||||||| ||||||||||||||  || ||||||||  |||||||||||||||||| |||| | | || ||||| | ||| |||||||| ||||||||     
T  20880519 tattttcataagttctccaatatagcttttaaaaacagtttatagcatatacaaaaacaatttaac-ttgttttatcatttgctataaaaatagcttatg 20880421  T
Q  262 caaacttatgcataagcgcttatt 285  Q
     || ||||| ||||||| ||||||    
T  20880420 taagcttatacataagcacttatt 20880397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 30443936 - 30443881
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaa 217  Q
    ||||||||| |||||||||||||| ||||||||||||  |||||||||||||||||    
T  30443936 tattttcataagttctccaatatagtttataaaaacagcttatagcatatacaaaa 30443881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 284
Target Start/End: Complemental strand, 39980772 - 39980650
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttata 261  Q
    ||||||||| ||||||||||||||  |||||||||||| ||||||||| | |||||| |||| | | ||||| ||  || | ||||||||  |||| ||     
T  39980772 tattttcataagttctccaatatagcttataaaaacaacttatagcatgttcaaaaacaatttaacgttattgtatgttctgctataaaaaaagctaatg 39980673  T
Q  262 caaacttatgcataagcgcttat 284  Q
    ||||||||| |||||| ||||||    
T  39980672 caaacttatacataagtgcttat 39980650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 259
Target Start/End: Original strand, 36631078 - 36631175
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagctta 259  Q
    ||||||||| ||||||||||||||  | |||||||||| ||||||||| |||||||| |||| | | ||| |||| | ||||||||| || |||||||    
T  36631078 tattttcataagttctccaatatagctcataaaaacaacttatagcatgtacaaaaacaatttaactttactttatcctttactatagaaatagctta 36631175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 36189609 - 36189529
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttacctttt 242  Q
    ||||||||| ||||||||||||||| ||||||||| |  ||||| |||||||||||| |||| | | |||||||| |||||    
T  36189609 tattttcataagttctccaatatatcttataaaaatagcttatatcatatacaaaaacaatttaactttattttatctttt 36189529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 277
Target Start/End: Complemental strand, 4401092 - 4400974
Alignment:
Q  157 taacatattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactat-aaaagtag 255  Q
    |||| ||||||||| ||||||||||||||  |||   |||||| ||||||||||||| ||||||||| | | |||||| |||||||  ||| ||||  ||    
T  4401092 taacttattttcataagttctccaatataactta---aaacaacttatagcatatacgaaaataatttaacgttatttcaccttttggtataaaaaaaag 4400996  T
Q  256 cttatacaaacttatgcataag 277  Q
    ||||| ||||||||| ||||||    
T  4400995 cttatgcaaacttatacataag 4400974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 282
Target Start/End: Original strand, 18405861 - 18405979
Alignment:
Q  165 tttcattagttctccaatatattttataaaaacaagttatagcatatac-aaaaataattcatcattattttaccttttactataaaagtagcttataca 263  Q
    |||||| |||||||||| |||  |||| ||||||| ||||||||||||| ||||| |||||| |  ||||||| ||||| ||||| || || |||||  |    
T  18405861 tttcataagttctccaagatagcttatgaaaacaacttatagcatatacaaaaaaaaattcaacgatattttatcttttcctatataaataacttatgta 18405960  T
Q  264 aacttatgcataagcgctt 282  Q
    | ||||| |||||||||||    
T  18405961 agcttatacataagcgctt 18405979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 10704639 - 10704712
Alignment:
Q  201 ttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaacttatgcat 274  Q
    |||||||| ||||||||| |||| | ||| |||||| ||||| |||||||||||||||||  || |||||||||    
T  10704639 ttatagcaaatacaaaaacaatttaacatcattttatcttttgctataaaagtagcttatgtaagcttatgcat 10704712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 47132374 - 47132313
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataatt 223  Q
    ||||||||| | ||||||||||||  ||||||||||||  ||||||||||||||||| ||||    
T  47132374 tattttcataacttctccaatatagcttataaaaacaacctatagcatatacaaaaacaatt 47132313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 901967 - 901907
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataat 222  Q
    ||||||||| ||||||||||||||  ||||||||||||  |||| |||||| |||||||||    
T  901967 tattttcataagttctccaatatagcttataaaaacaaagtataacatatataaaaataat 901907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 30956663 - 30956767
Alignment:
Q  172 agttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaacttatg 271  Q
    |||||||||| |||  || | ||||||| ||||||| |||||||||| |||| | | |||||||| ||||| ||||| || ||||||||  || ||||||    
T  30956663 agttctccaagatagcttttgaaaacaacttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaatagcttatgtaagcttatg 30956762  T
Q  272 cataa 276  Q
    |||||    
T  30956763 cataa 30956767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 30972475 - 30972579
Alignment:
Q  172 agttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaacttatg 271  Q
    |||||||||| |||  || | ||||||| ||||||| |||||||||| |||| | | |||||||| ||||| ||||| || ||||||||  || ||||||    
T  30972475 agttctccaagatagcttttgaaaacaacttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaatagcttatgtaagcttatg 30972574  T
Q  272 cataa 276  Q
    |||||    
T  30972575 cataa 30972579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 49034291 - 49034379
Alignment:
Q  163 attttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaa 251  Q
    |||||||  ||||||||||||||  |||||||||||| ||||||||||| || ||| |||| | |  ||||||| ||||| ||||||||    
T  49034291 attttcagaagttctccaatatagcttataaaaacaacttatagcatatgcacaaacaatttaacggtattttatcttttgctataaaa 49034379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 35959495 - 35959581
Alignment:
Q  174 ttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttat 260  Q
    ||||| ||||||  ||||| |||||| ||| ||||||||||||||||||| | | |||||||| | ||| ||||| || ||||||||    
T  35959495 ttctctaatatagcttatagaaacaacttacagcatatacaaaaataatttaactttattttatccttttctatagaaatagcttat 35959581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 263
Target Start/End: Original strand, 44061053 - 44061151
Alignment:
Q  165 tttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttataca 263  Q
    |||||| ||||||| || ||||  ||| ||||||| ||||||| |||| ||||| |||| | | |||||||| ||||| ||||| || |||||||||||    
T  44061053 tttcataagttctctaagatatcatatgaaaacaacttatagcttatagaaaaacaatttaaccttattttatcttttgctatagaaatagcttataca 44061151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 12862285 - 12862330
Alignment:
Q  172 agttctccaatatattttataaaaacaagttatagcatatacaaaa 217  Q
    ||||||||||||||  |||| ||||||| |||||||||||||||||    
T  12862285 agttctccaatatagcttatgaaaacaacttatagcatatacaaaa 12862330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 282
Target Start/End: Complemental strand, 21335718 - 21335597
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttata 261  Q
    ||||||||| ||||||| | ||||  |||| ||||||  ||| || ||||||||||| || | | | |||||||| ||||| |||||||| ||||||||     
T  21335718 tattttcataagttctctagtatagcttatgaaaacagcttacagaatatacaaaaacaactaaactttattttatctttttctataaaattagcttatt 21335619  T
Q  262 caaacttatgc-ataagcgctt 282  Q
     || ||||||| ||||||||||    
T  21335618 taagcttatgctataagcgctt 21335597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 33231770 - 33231710
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataatt 223  Q
    |||||||||||||||||||| |||  ||| |||||||| || || |||||||||||||||||    
T  33231770 tattttcattagttctccaagatagattacaaaaacaactt-taccatatacaaaaataatt 33231710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 47587496 - 47587455
Alignment:
Q  177 tccaatatattttataaaaacaagttatagcatatacaaaaa 218  Q
    ||||||||| ||||||||||||| ||||| ||||||||||||    
T  47587496 tccaatatagtttataaaaacaacttataacatatacaaaaa 47587455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 6521121 - 6521028
Alignment:
Q  188 ttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaacttatgcataagcgctt 282  Q
    |||||||||||  ||| ||||||||||||||||||| ||| |||||| || |||| |||||||||||| ||||  || |||||||||||||||||    
T  6521121 ttataaaaacagcttacagcatatacaaaaataatttatctttatttaacatttt-ctataaaagtagtttatgaaagcttatgcataagcgctt 6521028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 251
Target Start/End: Complemental strand, 32009762 - 32009646
Alignment:
Q  135 acaatttttataaatatttttctaacatattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattt 234  Q
    |||||||| |||||  |||||  ||| | ||||||| ||||||||||||||  |||||||||||| ||||||||||||||| || |||||| | | ||||    
T  32009762 acaattttcataaagcttttttgaacttgttttcataagttctccaatatagcttataaaaacaatttatagcatatacaagaacaattcaacttcattt 32009663  T
Q  235 taccttttactataaaa 251  Q
    ||  |||| ||||||||    
T  32009662 tatgtttttctataaaa 32009646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 284
Target Start/End: Original strand, 16458006 - 16458127
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttata 261  Q
    ||||||||  ||||||||||| ||  | |||||||||| |||||||||||||||||| |||| |   |||||||| ||||| |||||||| ||||||||     
T  16458006 tattttcacaagttctccaatttagctcataaaaacaacttatagcatatacaaaaacaattta-agttattttatcttttgctataaaaatagcttatg 16458104  T
Q  262 caaacttatgcataagcgcttat 284  Q
    ||| |||||  |||||| |||||    
T  16458105 caagcttatatataagcacttat 16458127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 16937910 - 16937991
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttacctttta 243  Q
    ||||||| | ||||||||||||||   ||||||||||| |||||||||||||||||| |||| | | |||||||| ||||||    
T  16937910 tattttcctaagttctccaatatagcgtataaaaacaacttatagcatatacaaaaacaatttaacgttattttatctttta 16937991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 242
Target Start/End: Original strand, 34102292 - 34102421
Alignment:
Q  113 gaatttttgaaaataccttataacaatttttataaatatttttctaacatattttcattagttctccaatatattttataaaaacaagttatagcatata 212  Q
    |||||| |||||||| ||||  |||||||| |||| | ||||  | || | ||||||| |||||||||| ||   |||||||||||| ||||||||||||    
T  34102292 gaatttatgaaaatagcttaagacaattttcataacttttttattgacttgttttcatgagttctccaacatggcttataaaaacaacttatagcatata 34102391  T
Q  213 caaaaataattcatcattattttacctttt 242  Q
    |||||| || | | |||||||||| |||||    
T  34102392 caaaaacaaattaacattattttatctttt 34102421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 285
Target Start/End: Complemental strand, 29925884 - 29925761
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttata 261  Q
    ||||||||| ||||||||||||||  ||||  |||||| |||||||| ||||| ||| |||| | |  ||||||| ||||| |||||||| ||||||||     
T  29925884 tattttcataagttctccaatatagcttatgtaaacaacttatagcacatacagaaacaatttaacgctattttatcttttgctataaaaatagcttatg 29925785  T
Q  262 caaacttatgcataagcgcttatt 285  Q
    ||| | ||| | |||||| |||||    
T  29925784 caagcatatacttaagcgtttatt 29925761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 284
Target Start/End: Complemental strand, 10640007 - 10639874
Alignment:
Q  151 tttttctaacatattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaa 250  Q
    |||||||| | ||||||||| |||||||||| ||| |||||  |||||| | ||  |||||||||||| |||| |   | |||||| ||||| ||||| |    
T  10640007 tttttctagcttattttcataagttctccaaaatagtttatgtaaacaactcatcacatatacaaaaacaatttaatttaattttatcttttgctataga 10639908  T
Q  251 agtagcttatacaaacttatgcataagcgcttat 284  Q
    | ||||||||| | |||||| |||||| ||||||    
T  10639907 aatagcttatatagacttatacataagtgcttat 10639874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 27298106 - 27298061
Alignment:
Q  172 agttctccaatatattttataaaaacaagttatagcatatacaaaa 217  Q
    ||||||||||||||| |||||||||||| |||||||||||| ||||    
T  27298106 agttctccaatatatcttataaaaacaacttatagcatataaaaaa 27298061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 284
Target Start/End: Complemental strand, 25461134 - 25461013
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttata 261  Q
    ||||||||| |||||||||||| |  |||| ||||||| ||||| |||||||||||| ||| || | ||| |||| ||||| ||| |||| |||||||      
T  25461134 tattttcatcagttctccaatagagcttatgaaaacaacttataacatatacaaaaacaatacaacttta-tttatcttttgctagaaaaatagcttacg 25461036  T
Q  262 caaacttatgcataagcgcttat 284  Q
    ||| |||||  |||||| |||||    
T  25461035 caagcttatatataagctcttat 25461013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 7999184 - 7999127
Alignment:
Q  227 cattattttaccttttactataaaagtagcttatacaaacttatgcataagcgcttat 284  Q
    |||||||||||||||| | |||||| || ||||| ||| ||||| |||||||||||||    
T  7999184 cattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 7999127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 263
Target Start/End: Complemental strand, 12425614 - 12425513
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttata 261  Q
    ||||||||| |||||||||| |||  || | ||||||  ||||||| ||||| |||| |||| | | |||||||| ||||||||||| || ||| |||||    
T  12425614 tattttcataagttctccaagatagcttgtgaaaacagcttatagcttatacgaaaacaatttaactttattttatcttttactatataaatagtttata 12425515  T
Q  262 ca 263  Q
    ||    
T  12425514 ca 12425513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 12554545 - 12554501
Alignment:
Q  179 caatatattttataaaaacaagttatagcatatacaaaaataatt 223  Q
    |||||||  |||||||||||| |||||||||||||||||| ||||    
T  12554545 caatataggttataaaaacaacttatagcatatacaaaaacaatt 12554501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 43300921 - 43300865
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaa 218  Q
    ||||||||| |||||||||| |||  ||| |||||||| |||||| |||||||||||    
T  43300921 tattttcataagttctccaagatagcttacaaaaacaacttataggatatacaaaaa 43300865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 188 - 284
Target Start/End: Complemental strand, 38750375 - 38750279
Alignment:
Q  188 ttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaacttatgcataagcgcttat 284  Q
    |||||||||||| ||||| |||||||||||| | || | |||||||||  || |  |||||||| |||||||| ||| ||||| |||||||||||||    
T  38750375 ttataaaaacaacttatatcatatacaaaaacattttaacattattttttctctgcctataaaaatagcttatgcaagcttatacataagcgcttat 38750279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 11861858 - 11861791
Alignment:
Q  151 tttttctaacatattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaa 218  Q
    ||||| |||| ||||||||| ||||||| | ||||  |||||||||||| ||||||||||||||||||    
T  11861858 tttttttaacgtattttcataagttctctattatagcttataaaaacaacttatagcatatacaaaaa 11861791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 284
Target Start/End: Complemental strand, 12976253 - 12976134
Alignment:
Q  165 tttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttatacaa 264  Q
    |||||| ||||||| ||||||  |||||||||||| || ||||||||| |||| ||||| | | ||||||||  |||| ||||| || ||||||||   |    
T  12976253 tttcataagttctctaatatagcttataaaaacaaattgtagcatataaaaaattaatttaactttattttatattttgctatagaaatagcttatgtga 12976154  T
Q  265 acttatgcataagcgcttat 284  Q
     ||||| |||||||||||||    
T  12976153 gcttatacataagcgcttat 12976134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 282
Target Start/End: Original strand, 16825515 - 16825684
Alignment:
Q  111 gagaatttttgaaaataccttataacaatttttataaatatttttctaacatattttcattagttctccaatatattttataaaaacaagttatagcata 210  Q
    ||||| || |||||||| ||||| |||||||| ||||   |||||| ||| ||||||||| |||||  |||||||  || || |||||| ||||| | ||    
T  16825515 gagaacttatgaaaatagcttatgacaattttcataagc-tttttc-aacttattttcataagttcggcaatatagcttgtagaaacaacttataacgta 16825612  T
Q  211 tacaaaaataattcatcattattttaccttttactataaaagtagcttatacaaacttatgcataagcgctt 282  Q
     ||||||| |||| | |||||||||| | |||||||||| | |||||||| |||  |||| |||||||||||    
T  16825613 aacaaaaacaatttaacattattttatcctttactataagaatagcttatgcaaggttatacataagcgctt 16825684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 26771308 - 26771210
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttat 260  Q
    ||||||||| ||||||| ||||||| ||||||||| |  |||||||||||||||||| |||| |   ||||||||   ||||||||| || ||||||||    
T  26771308 tattttcataagttctctaatatatcttataaaaaaagcttatagcatatacaaaaacaatttaagtttattttatgctttactatagaaatagcttat 26771210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 18133699 - 18133644
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaa 217  Q
    ||||||||| |||||||||||||| ||||||||| ||  |||||| ||||||||||    
T  18133699 tattttcataagttctccaatatagtttataaaaccagcttataggatatacaaaa 18133644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 223
Target Start/End: Complemental strand, 37945700 - 37945579
Alignment:
Q  100 ataagttttgtgagaatttttgaaaataccttataacaatttttataaatatttttctaacatattttcattagttctccaatatattttataaaaacaa 199  Q
    |||||||||| ||||| || |||||| | ||||| |||||||  ||||  |||||| |||| ||||||||  |||| | |||||||  ||||||||||||    
T  37945700 ataagttttgggagaacttctgaaaacagcttatgacaatttccataagcattttt-taacttattttcagaagttgtacaatatagcttataaaaacaa 37945602  T
Q  200 gttatagcatatacaaaaataatt 223  Q
     | ||||||||||||||| |||||    
T  37945601 ct-atagcatatacaaaattaatt 37945579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 263
Target Start/End: Complemental strand, 10114532 - 10114432
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactataaaagtagcttata 261  Q
    |||||||||  |||||||||||||  | || ||||||  ||||||| ||||| |||| |||||| | |||||||| ||||| ||||| || |||||||||    
T  10114532 tattttcatatgttctccaatatagctaatgaaaacagcttatagcttataccaaaacaattcaac-ttattttatcttttgctatagaaatagcttata 10114434  T
Q  262 ca 263  Q
    ||    
T  10114433 ca 10114432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 15180584 - 15180523
Alignment:
Q  162 tattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataatt 223  Q
    ||||||||  ||||||||||||||  ||||| |||||| ||||| ||| |||||||||||||    
T  15180584 tattttcagaagttctccaatatagcttatagaaacaacttataacatttacaaaaataatt 15180523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 29205861 - 29205765
Alignment:
Q  152 ttttctaacatattttcattagttctccaatatattttataaaaacaagttatagcatatacaaaaataattcatcattattttaccttttactata 248  Q
    |||| |||| || |||||| | |||||||| ||| ||||| |||| || |||||||||||||||||| |||| | | | |||||| ||||| |||||    
T  29205861 ttttttaacctactttcataaattctccaaaatagtttatgaaaataacttatagcatatacaaaaacaatttaacttcattttatctttttctata 29205765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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