View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_34 (Length: 396)
Name: NF18936_low_34
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 64 - 378
Target Start/End: Complemental strand, 6028168 - 6027859
Alignment:
| Q |
64 |
tatcaagtggatggtaggatatatttcattcggtttaaacaaatgtttttggttagaactcagctccgaaaatacaataatattaaatcaaagcttttaa |
163 |
Q |
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| T |
6028168 |
tatcaagtggatggtaggatatatttcattcggtttaaacaaatgtttttggttagaactgagctctgaaaatacaataatattaaatcaaagcttttaa |
6028069 |
T |
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| Q |
164 |
cttttgagagagttttttcatttacagtcatactcgatttgagtgattaatttctcctgttacacatagagatatccagtaaaaaatattatgtgtgtgt |
263 |
Q |
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| T |
6028068 |
cttttgagagagttttttcatctacggtcatactcgatttgagtgattaatctctcctgttacacatagagatatccggtaaaaaatattatgtgtgtgt |
6027969 |
T |
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| Q |
264 |
ctttatgtgtannnnnnnnnnnnnngtaagaaatcaaacttaacattaaagataatcgaaactttaaagagaaaactaaaaggaccaatcctagtgtgta |
363 |
Q |
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| T |
6027968 |
ctttatgtgta-----tttttttttgtaagaagtcaaacttaacattaaagagaatcgaaactttaaagagaaaactaaaaggaccaatccaagtgtgta |
6027874 |
T |
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| Q |
364 |
tataattatttataa |
378 |
Q |
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||||||||||||||| |
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| T |
6027873 |
tataattatttataa |
6027859 |
T |
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