View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_39 (Length: 388)
Name: NF18936_low_39
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 158 - 375
Target Start/End: Complemental strand, 13159427 - 13159210
Alignment:
| Q |
158 |
gtcaaaataatcttgtatctagaaatctatcaaaccttgcatacctcaatgattgtaatttacgaaattttgagcaaatgaaataaaagaggaggtagtt |
257 |
Q |
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| T |
13159427 |
gtcaaaataatcttgcatctagaaatctatcaaaccgtgcatacctcaatgattgtaatttacgaaattttgagcaaatgaaataaaagaggaggtagtt |
13159328 |
T |
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| Q |
258 |
caagttatgttacaaagagaataaattaagtgaaagcaacacgtaaaataattaagttaatagattttaaatgacaaaatgagagctgagtgaactgaaa |
357 |
Q |
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| T |
13159327 |
caagttatgttacaaagagaataaattaagtgaaagcaacacgtaaaataattaagttaatagattttaaatgacaaaatgagagcagagtgaactgaaa |
13159228 |
T |
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| Q |
358 |
tatgtacaaggatgaaaa |
375 |
Q |
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|||||||||||| ||||| |
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| T |
13159227 |
tatgtacaaggacgaaaa |
13159210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 92
Target Start/End: Complemental strand, 13159522 - 13159491
Alignment:
| Q |
61 |
ggaatagaacttttagaaagattaaactcaag |
92 |
Q |
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| T |
13159522 |
ggaatagaacttttagaaagattaaactcaag |
13159491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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