View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_40 (Length: 381)
Name: NF18936_low_40
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 2 - 347
Target Start/End: Original strand, 38950778 - 38951123
Alignment:
| Q |
2 |
tttatactttggttaacccgaagttacaattcnnnnnnnnnnncttcaagaaagtcctagaacaaaataaataagaaggaagcaagcttattacttaagc |
101 |
Q |
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| T |
38950778 |
tttatactttggttaacccgaagttacaattcatttttttttt-ttcaagcaagtcctggaacaaaataaataagaaggaagcaagcttattactcaagc |
38950876 |
T |
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| Q |
102 |
ttaatatttgttatcaccccctacttttatacatgttgcaatatccaaattcttgatgataggaaaaagaatcccccagtctttataattgttcaataat |
201 |
Q |
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| T |
38950877 |
ttaatatttgttatcaccccctacttttatacatgctgcaatatccaaattcttgatgataggaaaaagaatcccccaatctttataattgttcaataat |
38950976 |
T |
|
| Q |
202 |
aggtgtagttggctactacaaacagtaaatatgtcatttcaagcatgaagttctga-nnnnnnngctgaataagcaggtaatatcagggctgatcatgct |
300 |
Q |
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| T |
38950977 |
aggtgtagttggctactacaaacagtaaatctgtcatttcatgcatgaagttctgattttttttgctgaataagcaggtaatatcagggctgatcatgct |
38951076 |
T |
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| Q |
301 |
atgaatagacattgatcaatcactgaataatttgctgaatcatataa |
347 |
Q |
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| T |
38951077 |
atgaatagaccttgatcaattactgaataatctgctgaatcatataa |
38951123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 110 - 363
Target Start/End: Complemental strand, 3012262 - 3012008
Alignment:
| Q |
110 |
tgttatcaccccctacttttatacatgttgcaatatccaaattcttgatgataggaaaaagaatcccccagtctttataattgttcaataataggtgtag |
209 |
Q |
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| T |
3012262 |
tgttatcaccccctacttttatacatgttgcaatatccaaattcttgatgataggaaaaagaatcccccaatctttataattgttcaataataggtgtag |
3012163 |
T |
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| Q |
210 |
ttggctactacaaacagtaaatatgtcatttcaagcatgaagttctga-nnnnnnngctgaataagcaggtaatatcagggctgatcatgctatgaatag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3012162 |
ttggctactacaaacagtaaatatgtcatttcaagcatgaagttctgattttttttgctgaataagcaggtaatatcagggctgatcatgctatgaatag |
3012063 |
T |
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| Q |
309 |
acattgatcaatcactgaataatttgctgaatcatataattgtgagacctttctt |
363 |
Q |
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|| ||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
3012062 |
accttgatcaattaatgaataatttgctgaatcatataattgtgagacctttctt |
3012008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 33
Target Start/End: Complemental strand, 3012384 - 3012353
Alignment:
| Q |
2 |
tttatactttggttaacccgaagttacaattc |
33 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3012384 |
tttatactttggttaacccgaagttacaattc |
3012353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 3012342 - 3012310
Alignment:
| Q |
46 |
ttcaagaaagtcctagaacaaaataaataagaa |
78 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
3012342 |
ttcaagaaagtcctggaacaaaataaataagaa |
3012310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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