View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18936_low_41 (Length: 375)
Name: NF18936_low_41
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_41 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 26734801 - 26735158
Alignment:
| Q |
18 |
ctaataactacttggacggcccggtcccaccggggatttttcagttgccttctgtacagataatagagcttggaaataaccgttttaacggccaactacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26734801 |
ctaataactacttggacggcccggtcccaccggggatttttcagttgccttctgtacagataatagagcttggaaataaccgttttaacggccaactacc |
26734900 |
T |
|
| Q |
118 |
aacggagatttctggcaattctctcgggaatctcgctctttctaacaatttatttaccgggaggattccggcgtccatgaagaatctccgatcactgcag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26734901 |
aacggagatttctggcaattctctcgggaatctcgctctttctaacaatttatttaccgggaggattccggcgtccatgaagaatctccgatcactgcag |
26735000 |
T |
|
| Q |
218 |
acgctgttactcgatgccaatcagtttctcggagaaattccggcagaggtctttgctttaccggtgttgactagaatcaatataagtggcaataatctca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26735001 |
acgctgttactcgatgccaatcagtttctcggagaaattccggcagaggtctttgctttaccggtgttgactagaatcaacataagtggcaataatctca |
26735100 |
T |
|
| Q |
318 |
ccggtggaattccaaagacggttactcaatgtagttcactgactgcagttgacttcag |
375 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26735101 |
ctggtggaattccaaagacggttactcaatgtagttcactgactgcagttgacttcag |
26735158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 26726487 - 26726844
Alignment:
| Q |
18 |
ctaataactacttggacggcccggtcccaccggggatttttcagttgccttctgtacagataatagagcttggaaataaccgttttaacggccaactacc |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| || |||||| |||||||||||||||||||||||||||| |
|
|
| T |
26726487 |
ctaataactacttggacggcctggtcccaccgggaatttttcagttgccttctgtaacgatgatggagcttagaaataaccgttttaacggccaactacc |
26726586 |
T |
|
| Q |
118 |
aacggagatttctggcaattctctcgggaatctcgctctttctaacaatttatttaccgggaggattccggcgtccatgaagaatctccgatcactgcag |
217 |
Q |
| |
|
| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26726587 |
atcggagatttccggcaattctctcgggattctcgctctttctaacaatttatttaccgggaggatttcggcgtccatgaagaatctccgatcactgcag |
26726686 |
T |
|
| Q |
218 |
acgctgttactcgatgccaatcagtttctcggagaaattccggcagaggtctttgctttaccggtgttgactagaatcaatataagtggcaataatctca |
317 |
Q |
| |
|
|| ||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||| ||||||| |
|
|
| T |
26726687 |
actctgttactcgacgccaatcagtttgtcggagaaattccgacagaggtctttgctttaccggtgttgactagaattaacataagtggcaacaatctca |
26726786 |
T |
|
| Q |
318 |
ccggtggaattccaaagacggttactcaatgtagttcactgactgcagttgacttcag |
375 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| || |||| || ||||||||||| |
|
|
| T |
26726787 |
ctggtggaattccaaagacggttactcaatgtagtacattgacagccgttgacttcag |
26726844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University