View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_43 (Length: 345)
Name: NF18936_low_43
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 43460932 - 43461253
Alignment:
| Q |
18 |
tatttttaccctccggttctcaataattgttccactcaaagaatcaaactcgagtttatccaaacgatttgtcttttagtaaagttcatcagctgcttga |
117 |
Q |
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| T |
43460932 |
tatttttaccctccggttctcaataattgttccactcaagtaatcaaactcaaatttatccaaatgatttgtcctttagtgaagttcatcagctgcttga |
43461031 |
T |
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| Q |
118 |
gttcaataaatttattacaaattcccgtatatcttacaaaaaggaattcatgcatttactgataaatggccaatgctagctgtaacgtgcattattgatt |
217 |
Q |
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| T |
43461032 |
gctcaataaatttattacacattcccatatatcttacaaaaaggaattcatgcatatactgataaatggccaatgctagctgtaacgtgcattattgatt |
43461131 |
T |
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| Q |
218 |
gcgcatttcagtgccgaaaatggt---------nnnnnnnnnntaagaaatatcgtgatgatcatctattatagggtgacatttcttgtctctttattag |
308 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43461132 |
gcgcatttcagtgccgaaaatggtaaaaaaaaaataataataataagaaatatcgtgatgatcatctattatagggtgacatttcttgtctctttattag |
43461231 |
T |
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| Q |
309 |
tcatatactcatattgatctct |
330 |
Q |
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|||||||||||||||||||||| |
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| T |
43461232 |
tcatatactcatattgatctct |
43461253 |
T |
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