View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18936_low_44 (Length: 330)

Name: NF18936_low_44
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18936_low_44
NF18936_low_44
[»] chr3 (15 HSPs)
chr3 (93-321)||(22909419-22909647)
chr3 (93-243)||(4489505-4489655)
chr3 (105-211)||(48457973-48458079)
chr3 (93-209)||(52669755-52669872)
chr3 (148-247)||(14464949-14465048)
chr3 (171-245)||(47180703-47180777)
chr3 (106-179)||(52119972-52120045)
chr3 (103-246)||(29178499-29178643)
chr3 (113-170)||(45707704-45707761)
chr3 (105-172)||(21079973-21080040)
chr3 (124-211)||(53143620-53143706)
chr3 (93-138)||(14476902-14476947)
chr3 (111-172)||(50596168-50596229)
chr3 (94-172)||(47968101-47968179)
chr3 (112-244)||(7886022-7886157)
[»] chr5 (25 HSPs)
chr5 (107-245)||(37194311-37194449)
chr5 (95-245)||(4277321-4277471)
chr5 (93-248)||(39323993-39324148)
chr5 (93-211)||(33207455-33207572)
chr5 (94-246)||(8433670-8433822)
chr5 (93-247)||(13417180-13417334)
chr5 (105-211)||(4942373-4942479)
chr5 (105-197)||(30471797-30471889)
chr5 (112-175)||(38037431-38037494)
chr5 (94-247)||(25768205-25768358)
chr5 (105-247)||(26148926-26149068)
chr5 (106-175)||(2552501-2552570)
chr5 (93-245)||(32534871-32535015)
chr5 (130-175)||(1309756-1309801)
chr5 (142-175)||(39954977-39955010)
chr5 (131-175)||(8228853-8228897)
chr5 (105-172)||(10933539-10933606)
chr5 (159-197)||(7053795-7053833)
chr5 (94-172)||(14089756-14089834)
chr5 (94-172)||(15635250-15635328)
chr5 (123-173)||(33494723-33494773)
chr5 (98-172)||(40976454-40976528)
chr5 (105-190)||(9784569-9784654)
chr5 (112-160)||(14639951-14639999)
chr5 (139-175)||(18396512-18396548)
[»] chr6 (6 HSPs)
chr6 (93-248)||(6793823-6793978)
chr6 (103-237)||(378623-378757)
chr6 (105-197)||(11703142-11703234)
chr6 (94-234)||(29383370-29383509)
chr6 (105-191)||(30250377-30250463)
chr6 (131-247)||(32658347-32658463)
[»] chr1 (34 HSPs)
chr1 (93-243)||(31636512-31636662)
chr1 (93-245)||(23625149-23625302)
chr1 (95-245)||(44573799-44573949)
chr1 (96-245)||(4448013-4448163)
chr1 (112-245)||(14884668-14884801)
chr1 (93-206)||(50270778-50270891)
chr1 (112-211)||(32913925-32914024)
chr1 (140-245)||(23740165-23740270)
chr1 (94-234)||(45467596-45467736)
chr1 (119-245)||(31206259-31206384)
chr1 (94-208)||(38865340-38865453)
chr1 (93-245)||(15456966-15457118)
chr1 (93-237)||(44415939-44416082)
chr1 (93-245)||(3582751-3582906)
chr1 (103-172)||(14395977-14396046)
chr1 (94-209)||(5300458-5300573)
chr1 (93-188)||(42483687-42483782)
chr1 (105-211)||(1774958-1775064)
chr1 (130-212)||(6704142-6704223)
chr1 (105-247)||(43177764-43177906)
chr1 (130-211)||(19512931-19513012)
chr1 (93-190)||(42401048-42401145)
chr1 (171-247)||(8779655-8779731)
chr1 (112-175)||(7789778-7789841)
chr1 (109-172)||(33259432-33259495)
chr1 (109-172)||(33279591-33279654)
chr1 (105-171)||(42489051-42489117)
chr1 (105-246)||(5827593-5827734)
chr1 (112-175)||(5040953-5041016)
chr1 (123-190)||(33726878-33726945)
chr1 (93-247)||(35615397-35615550)
chr1 (131-175)||(47783647-47783691)
chr1 (112-190)||(44240415-44240493)
chr1 (131-211)||(32451716-32451796)
[»] chr7 (27 HSPs)
chr7 (95-240)||(27816496-27816641)
chr7 (105-196)||(42710459-42710550)
chr7 (93-241)||(41003296-41003444)
chr7 (94-244)||(46208940-46209090)
chr7 (105-245)||(25795745-25795886)
chr7 (95-242)||(10248962-10249110)
chr7 (111-245)||(17603739-17603873)
chr7 (93-243)||(5532685-5532836)
chr7 (94-192)||(33987801-33987899)
chr7 (111-211)||(30224753-30224853)
chr7 (111-210)||(23307837-23307936)
chr7 (105-179)||(33815918-33815992)
chr7 (105-172)||(37503941-37504008)
chr7 (105-191)||(957986-958072)
chr7 (93-170)||(22074306-22074383)
chr7 (156-211)||(9153794-9153849)
chr7 (105-172)||(33882110-33882177)
chr7 (130-175)||(43302112-43302157)
chr7 (149-245)||(44483913-44484009)
chr7 (148-211)||(42988370-42988433)
chr7 (105-171)||(9486812-9486878)
chr7 (134-188)||(17000535-17000589)
chr7 (125-211)||(39837566-39837652)
chr7 (130-175)||(36656602-36656647)
chr7 (131-175)||(4958328-4958372)
chr7 (124-172)||(5355965-5356013)
chr7 (93-209)||(36655732-36655848)
[»] scaffold1114 (1 HSPs)
scaffold1114 (93-248)||(2347-2502)
[»] chr4 (26 HSPs)
chr4 (93-245)||(45064223-45064374)
chr4 (93-247)||(40047021-40047174)
chr4 (118-245)||(22424940-22425067)
chr4 (103-245)||(39193296-39193439)
chr4 (95-241)||(3161669-3161815)
chr4 (134-247)||(2062437-2062550)
chr4 (94-179)||(37247196-37247281)
chr4 (95-244)||(40757745-40757895)
chr4 (93-211)||(51997249-51997367)
chr4 (93-245)||(6076608-6076760)
chr4 (95-211)||(36219126-36219242)
chr4 (93-172)||(29627922-29628001)
chr4 (109-172)||(40946184-40946247)
chr4 (105-175)||(8757452-8757522)
chr4 (97-249)||(2128988-2129132)
chr4 (93-147)||(32212711-32212765)
chr4 (112-175)||(25479779-25479842)
chr4 (130-245)||(26417275-26417389)
chr4 (112-175)||(45047114-45047177)
chr4 (93-211)||(34483484-34483600)
chr4 (144-191)||(23928191-23928238)
chr4 (105-172)||(51676888-51676955)
chr4 (105-247)||(30599805-30599947)
chr4 (130-211)||(5834237-5834317)
chr4 (131-175)||(23359188-23359232)
chr4 (131-175)||(42426884-42426928)
[»] chr8 (18 HSPs)
chr8 (94-245)||(14728841-14728992)
chr8 (93-246)||(38901156-38901305)
chr8 (93-211)||(17793313-17793431)
chr8 (94-211)||(7176653-7176770)
chr8 (105-209)||(18807044-18807148)
chr8 (105-211)||(26705731-26705837)
chr8 (125-197)||(37187590-37187662)
chr8 (105-211)||(10288091-10288198)
chr8 (125-247)||(31511291-31511413)
chr8 (109-196)||(30905531-30905618)
chr8 (105-171)||(41123331-41123397)
chr8 (131-245)||(13628960-13629074)
chr8 (131-245)||(13729372-13729486)
chr8 (93-170)||(14581202-14581279)
chr8 (105-245)||(7207036-7207176)
chr8 (131-211)||(31226427-31226507)
chr8 (130-175)||(2603066-2603111)
chr8 (111-172)||(7573092-7573153)
[»] chr2 (12 HSPs)
chr2 (94-245)||(11511843-11511994)
chr2 (106-211)||(11915994-11916099)
chr2 (109-211)||(39445917-39446020)
chr2 (106-172)||(448806-448872)
chr2 (106-247)||(7772714-7772856)
chr2 (93-197)||(4062545-4062649)
chr2 (112-171)||(20683413-20683472)
chr2 (125-248)||(448991-449114)
chr2 (105-172)||(27974419-27974486)
chr2 (105-172)||(28060948-28061015)
chr2 (151-247)||(11922050-11922146)
chr2 (123-171)||(9973817-9973865)
[»] scaffold0110 (1 HSPs)
scaffold0110 (93-172)||(26734-26813)
[»] scaffold0578 (1 HSPs)
scaffold0578 (130-211)||(9926-10007)
[»] scaffold0067 (1 HSPs)
scaffold0067 (109-175)||(326-395)


Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 93 - 321
Target Start/End: Original strand, 22909419 - 22909647
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtca 192  Q
    ||||||||| |||||| ||||||||||||||||||| |||| |||| ||||||| |||||| ||||||||||||||||||||||||||||| |||| |||    
T  22909419 ggtgggacccaattaggccttttgctagagggtctccattgaagtggttgagtacctattaaatactattattaaaaaattattaaatagtgatgtatca 22909518  T
Q  193 atgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctcttaacggcgcccttaattcgggcacatgttagcatcaaccgttaaaat 292  Q
    ||||||||||||||||||| ||||||||||| | |||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  22909519 atgtgcgacccatttaagactttaaagatgagagtctctattgtggatgctcttaacggtgcccttaatttgggcacatgttagcatcaaccgttaaaat 22909618  T
Q  293 aatacaatgtcatttgttttgtagtataa 321  Q
    |||||||||||||||||||||||| ||||    
T  22909619 aatacaatgtcatttgttttgtagaataa 22909647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 93 - 243
Target Start/End: Original strand, 4489505 - 4489655
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtca 192  Q
    ||||||||| |||||||| ||||| ||||||||||| |||| |||| ||||||  |||||||||||||||||||||||||||||||| | | || ||| |    
T  4489505 ggtgggacccaattagacattttgttagagggtctccattgtagtggttgagtgcctattagatactattattaaaaaattattaaaaaatgatctgtaa 4489604  T
Q  193 atgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgct 243  Q
    |||||  | ||||||||||  | |||||||| | |||||||||||||||||    
T  4489605 atgtggaatccatttaagacctcaaagatgagagtctccattgtggatgct 4489655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 211
Target Start/End: Original strand, 48457973 - 48458079
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgaccca 204  Q
    |||||||||||| |||||||||||||||| |||  ||||||| ||||||| |||||| ||||||||||||| ||| ||| ||||||||||||| ||||||    
T  48457973 ttagaccttttgttagagggtctctattgaagtagttgagtacctattaggtactatcattaaaaaattataaaaaagtgatgtgtcaatgtgggaccca 48458072  T
Q  205 tttaaga 211  Q
    |||||||    
T  48458073 tttaaga 48458079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 52669755 - 52669872
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattatt-aaaaaattattaaatagtaatgtgtc 191  Q
    ||||||||| ||||| |||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||| |||||| | | |||||||    
T  52669755 ggtgggacccaattaaaccttttgttagagggtctccattggagtggttgagtacctattagatactattattaaaaaaatcattaaaaaatgatgtgtc 52669854  T
Q  192 aatgtgcgacccatttaa 209  Q
    ||| || |||||||||||    
T  52669855 aatatgagacccatttaa 52669872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 148 - 247
Target Start/End: Complemental strand, 14465048 - 14464949
Alignment:
Q  148 ctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctctta 247  Q
    |||||| |||||||||||||||||||| |||| ||||||||||||| ||  |||||||||||||  | |||||||| | ||||||| |||||||||||||    
T  14465048 ctattaaatactattattaaaaaattaataaaaagtaatgtgtcaaggtaggacccatttaagacctcaaagatgagagtctccatcgtggatgctctta 14464949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 47180703 - 47180777
Alignment:
Q  171 attattaaatagtaatgtgtcaatgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctct 245  Q
    ||||||||| ||| ||||||||||||| ||| ||||||| | ||||||||||| |||||||||||||||||||||    
T  47180703 attattaaaaagtgatgtgtcaatgtgagactcatttaaaactttaaagatgagaatctccattgtggatgctct 47180777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 52120045 - 52119972
Alignment:
Q  106 tagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaa 179  Q
    ||||| ||||| |||  |||||| |||| |||| ||||||||||||||| ||||||||||||||||||||||||    
T  52120045 tagacattttgttagctggtctccattgtagtggttgagtatctattagttactattattaaaaaattattaaa 52119972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 246
Target Start/End: Complemental strand, 29178643 - 29178499
Alignment:
Q  103 aattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaa-aaaattattaaatagtaatgtgtcaatgtgcgac 201  Q
    ||||| || ||||||||||||||||| ||||||||| |||| || ||||||  || ||||||||| |||||||||||| | | ||||||| ||||| |||    
T  29178643 aattaaactttttgctagagggtctccattggagtgtttgaatacctattaagtattattattaaaaaaattattaaaaaatgatgtgtcgatgtgggac 29178544  T
Q  202 ccatttaagattttaaagatgaaaatctccattgtggatgctctt 246  Q
    | |||||| |  | |||||| | | |||||||||  |||||||||    
T  29178543 ctatttaaaacctcaaagataagagtctccattgcagatgctctt 29178499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 45707704 - 45707761
Alignment:
Q  113 tttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaa 170  Q
    |||| |||||| |||||||||||||| ||||||| ||||||| |||||||||||||||    
T  45707704 tttgttagaggatctctattggagtggttgagtacctattaggtactattattaaaaa 45707761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 21079973 - 21080040
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaat 172  Q
    |||||| ||||| |||| | ||||||||| |||| ||||||| |||||| ||||||||||||||||||    
T  21079973 ttagacgttttgatagatgatctctattgaagtggttgagtacctattaaatactattattaaaaaat 21080040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 211
Target Start/End: Original strand, 53143620 - 53143706
Alignment:
Q  124 gtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaaga 211  Q
    ||||||||||||||| ||||||||||||||| |||||| ||| ||||||||| ||| ||| | || |||||||| || || |||||||    
T  53143620 gtctctattggagtggttgagtatctattaggtactataatt-aaaaattatgaaaaagtgacgtttcaatgtgggatccgtttaaga 53143706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 14476947 - 14476902
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtg 138  Q
    |||||||||||||||||||||||| |||||||| || |||||||||    
T  14476947 ggtgggacctaattagaccttttgttagagggtttccattggagtg 14476902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 50596168 - 50596229
Alignment:
Q  111 cttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaat 172  Q
    |||||| |||| | |||||||| ||||| ||||||| ||||||| |||||||||||||||||    
T  50596168 cttttgatagaagatctctatttgagtggttgagtacctattaggtactattattaaaaaat 50596229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 47968101 - 47968179
Alignment:
Q  94 gtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaat 172  Q
    ||||||||  ||||||| ||||| |||||| |||| ||| ||||| ||||||| ||||||  || ||||||||||||||    
T  47968101 gtgggaccctattagacattttgttagaggatctccattagagtggttgagtacctattaagtattattattaaaaaat 47968179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 244
Target Start/End: Original strand, 7886022 - 7886157
Alignment:
Q  112 ttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattat---taaatagtaatgtgtcaatgtgcgacccattta 208  Q
    ||||| ||||| |||||||||||| ||  |||||| ||||| | |||||||||| |||||||||    ||| ||| ||||||| ||||| ||||| ||||    
T  7886022 ttttgttagagagtctctattggaatggctgagtacctatttggtactattattgaaaaattataaaaaaaaagtgatgtgtctatgtgagacccgttta 7886121  T
Q  209 agattttaaagatgaaaatctccattgtggatgctc 244  Q
    |||  | ||   | |||||||||||||| |||||||    
T  7886122 agacctcaagattaaaaatctccattgtagatgctc 7886157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 107 - 245
Target Start/End: Original strand, 37194311 - 37194449
Alignment:
Q  107 agaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatt 206  Q
    |||||||||| ||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||| ||| ||||||||||||| ||||||||    
T  37194311 agaccttttgttagagggtctctattggagtggttgagtacctattaggtactattattaaaaaattattaaaaagtgatgtgtcaatgtgagacccatt 37194410  T
Q  207 taagattttaaagatgaaaatctccattgtggatgctct 245  Q
    ||| |  | |||||||| |||||||||||||||||||||    
T  37194411 taaaacctcaaagatgagaatctccattgtggatgctct 37194449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 95 - 245
Target Start/End: Complemental strand, 4277471 - 4277321
Alignment:
Q  95 tgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaat 194  Q
    ||||||| |||||||||||||| ||||||||||| ||| ||||| |||||||  |||||| |||||||||||||||||||||||| ||| ||||||||||    
T  4277471 tgggacccaattagaccttttgttagagggtctcaatttgagtggttgagtagttattaggtactattattaaaaaattattaaaaagtgatgtgtcaat 4277372  T
Q  195 gtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctct 245  Q
     || |||||||||||||  | |||||||| | |||||||||| ||||||||    
T  4277371 atgagacccatttaagacctcaaagatgagagtctccattgtagatgctct 4277321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 93 - 248
Target Start/End: Complemental strand, 39324148 - 39323993
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtca 192  Q
    ||||||| | |||||||||||||| || |||||||| ||||||||| ||||||| ||||||  |||||||||||||||||||||||| ||| | ||||||    
T  39324148 ggtgggatccaattagaccttttgttatagggtctccattggagtggttgagtacctattaagtactattattaaaaaattattaaaaagttacgtgtca 39324049  T
Q  193 atgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctcttaa 248  Q
    || || |||||||||||||  | |||||||| | |||| |||||  ||||||||||    
T  39324048 atatgggacccatttaagacctcaaagatgagagtctctattgtaaatgctcttaa 39323993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 211
Target Start/End: Complemental strand, 33207572 - 33207455
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtca 192  Q
    ||||||||| |||||||||||||| ||||||||||| ||||||||| ||||||| ||||||  ||||||||||| |||||||||||| ||| ||||||||    
T  33207572 ggtgggacccaattagaccttttgttagagggtctccattggagtggttgagtacctattaagtactattatta-aaaattattaaaaagtgatgtgtca 33207474  T
Q  193 atgtgcgacccatttaaga 211  Q
    ||||| ||  |||||||||    
T  33207473 atgtgagattcatttaaga 33207455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 94 - 246
Target Start/End: Complemental strand, 8433822 - 8433670
Alignment:
Q  94 gtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaa 193  Q
    ||||||||  ||||||||||||| |||||| |||| |||| |||| ||||||| ||||||   ||||||||||||||||||||||| ||| ||||||| |    
T  8433822 gtgggaccctattagaccttttgttagaggatctccattgaagtggttgagtacctattaagcactattattaaaaaattattaaaaagtgatgtgtcca 8433723  T
Q  194 tgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctctt 246  Q
    |||| |||| ||||||||  | |||| |||   ||||||||||||||||||||    
T  8433722 tgtgggacctatttaagacctcaaagttgagggtctccattgtggatgctctt 8433670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 93 - 247
Target Start/End: Complemental strand, 13417334 - 13417180
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtca 192  Q
    ||||||||||| |||||||||||| |||| | |||||||||||||| ||||||| ||||||| ||||||| ||||||||| || ||| ||| |||||||     
T  13417334 ggtgggacctatttagaccttttgatagatgatctctattggagtggttgagtacctattaggtactattgttaaaaaataataaaaaagtgatgtgtcc 13417235  T
Q  193 atgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctctta 247  Q
    |||||  |||| |||||||  | |||  |||  ||||||||||| ||||||||||    
T  13417234 atgtggaacccgtttaagacctcaaatgtgaggatctccattgtagatgctctta 13417180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 4942479 - 4942373
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgaccca 204  Q
    |||||||||||| || |||||||||||||| ||| |||||||||| ||||||||||| |||||||||||||  || | | | ||||||||||| ||| ||    
T  4942479 ttagaccttttgttaaagggtctctattggtgtggttgagtatctgttagatactatcattaaaaaattatataaaaatgacgtgtcaatgtgagactca 4942380  T
Q  205 tttaaga 211  Q
    |||||||    
T  4942379 tttaaga 4942373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 30471797 - 30471889
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtg 197  Q
    |||||||||||| ||||| |||||| |||||||| ||||||| ||||||| |||||| ||||||||||||| ||| | | || ||||||||||    
T  30471797 ttagaccttttgttagagcgtctctgttggagtggttgagtacctattaggtactatcattaaaaaattataaaaaaatgatttgtcaatgtg 30471889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 175
Target Start/End: Original strand, 38037431 - 38037494
Alignment:
Q  112 ttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattat 175  Q
    ||||| |||||  |||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  38037431 ttttgttagagattctctattggagtgattgagtacctattagatattattattaaaaaattat 38037494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 94 - 247
Target Start/End: Original strand, 25768205 - 25768358
Alignment:
Q  94 gtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaa 193  Q
    |||||||| | |||||| ||||| |||||| |||  ||||||||  | ||||| ||||||| || |||||||||||||| || ||| ||| ||||||| |    
T  25768205 gtgggacccatttagacattttgatagaggatcttcattggagtagtcgagtacctattaggtattattattaaaaaataataaaaaagtgatgtgtcta 25768304  T
Q  194 tgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctctta 247  Q
    |||| ||||| |||||||  | |||  |||  |||||||| |||||||||||||    
T  25768305 tgtgggacccgtttaagacctcaaatgtgaggatctccatcgtggatgctctta 25768358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 247
Target Start/End: Original strand, 26148926 - 26149068
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgaccca 204  Q
    |||||| ||| | |||||| ||||||||  |||| ||||||||||||||  ||||||||||||||||| || ||| ||| ||||||| |||||   |||     
T  26148926 ttagacatttcgatagaggatctctattatagtggttgagtatctattacgtactattattaaaaaataataaaaaagtgatgtgtccatgtggagcccg 26149025  T
Q  205 tttaagattttaaagatgaaaatctccattgtggatgctctta 247  Q
    ||||| |  | |||  ||| ||||||||||||| |||||||||    
T  26149026 tttaaaacctcaaatgtgagaatctccattgtgaatgctctta 26149068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 2552501 - 2552570
Alignment:
Q  106 tagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattat 175  Q
    ||||| ||||| |||||||| || |||| |||| ||||||||||||||| | ||||||||||||||||||    
T  2552501 tagacattttgttagagggtatccattgtagtggttgagtatctattaggtgctattattaaaaaattat 2552570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 245
Target Start/End: Original strand, 32534871 - 32535015
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctct--attggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgt 190  Q
    ||||| ||| |||||||| ||||| ||||||||||||  ||||||||| ||||||| || |||| ||| |||||||||||          ||| ||||||    
T  32534871 ggtggaaccaaattagacattttgttagagggtctctccattggagtggttgagtaccttttaggtaccattattaaaaa----------agtgatgtgt 32534960  T
Q  191 caatgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctct 245  Q
    ||||||| |||| ||| ||||  | |||||||| | |||||||||||||||||||    
T  32534961 caatgtgagaccaattcaagacctcaaagatgagactctccattgtggatgctct 32535015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 1309801 - 1309756
Alignment:
Q  130 attggagtgattgagtatctattagatactattattaaaaaattat 175  Q
    ||||||||||||||||   |||||||||||||||||||||||||||    
T  1309801 attggagtgattgagtgcttattagatactattattaaaaaattat 1309756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 175
Target Start/End: Complemental strand, 39955010 - 39954977
Alignment:
Q  142 gagtatctattagatactattattaaaaaattat 175  Q
    ||||||||||||||||||||||||||||||||||    
T  39955010 gagtatctattagatactattattaaaaaattat 39954977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 8228853 - 8228897
Alignment:
Q  131 ttggagtgattgagtatctattagatactattattaaaaaattat 175  Q
    |||||| |||||||||| |||||||||||||| ||||||||||||    
T  8228853 ttggagggattgagtatttattagatactattgttaaaaaattat 8228897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 10933539 - 10933606
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaat 172  Q
    |||||||||||| |||||  | || |||| |||||||||||| ||||||  |||||||||||||||||    
T  10933539 ttagaccttttgatagagaatatccattgaagtgattgagtacctattaagtactattattaaaaaat 10933606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 7053795 - 7053833
Alignment:
Q  159 tattattaaaaaattattaaatagtaatgtgtcaatgtg 197  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  7053795 tattattaaaaaattattaaaaagtgatgtgtcaatgtg 7053833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 14089834 - 14089756
Alignment:
Q  94 gtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaat 172  Q
    |||| ||||| ||| || |||||||| | ||||| ||||| ||||| |||||| |||||||||| | ||||||||||||    
T  14089834 gtggaacctatttatactttttgctaaaaggtctatattgaagtgaatgagtacctattagatattgttattaaaaaat 14089756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 15635328 - 15635250
Alignment:
Q  94 gtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaat 172  Q
    |||||||| | ||| || |||||| | | |||||| |||||||||| |||||| ||||||| |||| ||||||||||||    
T  15635328 gtgggacccatttaaactttttgccaaaaggtctccattggagtgaatgagtacctattaggtactcttattaaaaaat 15635250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 33494773 - 33494723
Alignment:
Q  123 ggtctctattggagtgattgagtatctattagatactattattaaaaaatt 173  Q
    |||||||||||||||   |||||| ||||||| ||||||||||||||||||    
T  33494773 ggtctctattggagtagctgagtacctattaggtactattattaaaaaatt 33494723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 40976454 - 40976528
Alignment:
Q  98 gacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaat 172  Q
    |||||| |||||||||||| |||||| | || |||| |||| ||||||| ||||||| ||| |||||| ||||||    
T  40976454 gacctatttagaccttttgatagaggatgtccattgtagtggttgagtacctattagttacaattatttaaaaat 40976528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 190
Target Start/End: Complemental strand, 9784654 - 9784569
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgt 190  Q
    |||||| |||||| ||| |||||||| |||||||| |||||| ||||||  || | |||||||||||| || ||| ||| ||||||    
T  9784654 ttagactttttgccagaaggtctctagtggagtgaatgagtacctattaagtattgttattaaaaaataataaaaaagtgatgtgt 9784569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 14639951 - 14639999
Alignment:
Q  112 ttttgctagagggtctctattggagtgattgagtatctattagatacta 160  Q
    ||||| |||||  |||||||||||||| ||||||| |||||||||||||    
T  14639951 ttttgatagagaatctctattggagtggttgagtacctattagatacta 14639999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 18396548 - 18396512
Alignment:
Q  139 attgagtatctattagatactattattaaaaaattat 175  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  18396548 attgagtatttattaggtactattattaaaaaattat 18396512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 7e-40; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 93 - 248
Target Start/End: Complemental strand, 6793978 - 6793823
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtca 192  Q
    ||||||||| |||||||||||||| |||||||| || ||||||||| ||||||| ||||||| |||||||||||||||| ||||||| | |||||| |||    
T  6793978 ggtgggacccaattagaccttttgttagagggtttccattggagtggttgagtacctattaggtactattattaaaaaagtattaaaaaataatgtatca 6793879  T
Q  193 atgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctcttaa 248  Q
    ||||| ||| |||||||||  | |||||||| |||| |||||||||||||||||||    
T  6793878 atgtgggacacatttaagacctcaaagatgagaatcgccattgtggatgctcttaa 6793823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 103 - 237
Target Start/End: Original strand, 378623 - 378757
Alignment:
Q  103 aattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacc 202  Q
    |||||||||||||| ||||||||||| ||||||||| || |||| ||||||| |||||||||||||||||||||||| ||| | ||||||||||| ||||    
T  378623 aattagaccttttgttagagggtctccattggagtggtttagtacctattaggtactattattaaaaaattattaaaaagtgaagtgtcaatgtgggacc 378722  T
Q  203 catttaagattttaaagatgaaaatctccattgtg 237  Q
     ||||||||  | |||||||| | |||||||||||    
T  378723 tatttaagacctcaaagatgagagtctccattgtg 378757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 197
Target Start/End: Complemental strand, 11703234 - 11703142
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtg 197  Q
    |||||||||||| ||||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||| |||  || | |||||||||||    
T  11703234 ttagaccttttgttagagggtctctattggagtggttgagtacctattaggtactatcattaaaaaattataaaaaggtgacgtgtcaatgtg 11703142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 94 - 234
Target Start/End: Complemental strand, 29383509 - 29383370
Alignment:
Q  94 gtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaa 193  Q
    |||||| | |||||||||||||| |||||| ||||  |||||||||||||||| ||||||  || ||||||||||||||| ||||| |   |||||| ||    
T  29383509 gtgggatccaattagaccttttgttagaggatctccgttggagtgattgagtacctattaagtattattattaaaaaattgttaaa-aacgatgtgttaa 29383411  T
Q  194 tgtgcgacccatttaagattttaaagatgaaaatctccatt 234  Q
    |||| ||  |||||||||  |||||||||| ||||||||||    
T  29383410 tgtgagattcatttaagaccttaaagatgagaatctccatt 29383370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 191
Target Start/End: Original strand, 30250377 - 30250463
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtc 191  Q
    |||||| ||||  |||||| |||||||||||||  |||| || |||||| ||| ||||||||||||||||||||| ||| |||||||    
T  30250377 ttagactttttcttagaggatctctattggagttgttgattacctattaaatagtattattaaaaaattattaaaaagtgatgtgtc 30250463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 131 - 247
Target Start/End: Complemental strand, 32658463 - 32658347
Alignment:
Q  131 ttggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaagattttaaagatgaaaatctc 230  Q
    ||||||||||| ||| | |||||| ||||| |||||||||||||| ||  ||| ||||||| | ||| |||||||||||||   |||| ||||   ||||    
T  32658463 ttggagtgatttagtgtttattaggtactactattaaaaaattataaatgagtgatgtgtccacgtgagacccatttaagaacctaaaaatgagtgtctc 32658364  T
Q  231 cattgtggatgctctta 247  Q
    || ||||||||||||||    
T  32658363 cactgtggatgctctta 32658347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 93 - 243
Target Start/End: Original strand, 31636512 - 31636662
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtca 192  Q
    ||||||||| |||||||| ||||| ||||||||||| ||||||||| ||||||| ||||||| |||||||||||||||||||||||| ||| ||||||||    
T  31636512 ggtgggacccaattagactttttgttagagggtctccattggagtggttgagtacctattaggtactattattaaaaaattattaaaaagtgatgtgtca 31636611  T
Q  193 atgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgct 243  Q
    ||||| || ||||||||||  | |||||||| | ||||||||||| |||||    
T  31636612 atgtgagatccatttaagacctcaaagatgagagtctccattgtgaatgct 31636662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 93 - 245
Target Start/End: Original strand, 23625149 - 23625302
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattatt-aaatagtaatgtgtc 191  Q
    ||||||| | |||||||||||||| ||||||||||||||||||||| ||||||| || |||  |||||||||||||| |||||| ||| ||| |||||||    
T  23625149 ggtgggatccaattagaccttttgttagagggtctctattggagtggttgagtacctgttaagtactattattaaaatattattaaaaaagttatgtgtc 23625248  T
Q  192 aatgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctct 245  Q
    |||||| |||||||||||||  | |||||||| | |||||||||||||||||||    
T  23625249 aatgtgggacccatttaagacctcaaagatgagagtctccattgtggatgctct 23625302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 95 - 245
Target Start/End: Complemental strand, 44573949 - 44573799
Alignment:
Q  95 tgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaat 194  Q
    ||||||| ||||| |||||||| |||||| |||| ||||||||| ||||||| ||||||| |||||||||||||||||||||||| | |||||||| |||    
T  44573949 tgggacccaattaaaccttttgttagaggatctccattggagtggttgagtacctattaggtactattattaaaaaattattaaaaaataatgtgtaaat 44573850  T
Q  195 gtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctct 245  Q
    ||| |||||||||||||  | |||||||| | || | ||||||||||||||    
T  44573849 gtgagacccatttaagacctcaaagatgagagtcactattgtggatgctct 44573799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 4448013 - 4448163
Alignment:
Q  96 gggacctaattagaccttttgct-agagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaat 194  Q
    |||||| |||||||||||||| | |||||||||| ||||||||| ||||||| ||||||| |||||||||||||||| ||||||| | | ||||||||||    
T  4448013 gggacccaattagaccttttggttagagggtctccattggagtggttgagtacctattaggtactattattaaaaaaatattaaaaactgatgtgtcaat 4448112  T
Q  195 gtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctct 245  Q
    ||| || ||||||||||  | | |||| | | ||||||||| |||||||||    
T  4448113 gtgggatccatttaagacctcagagataagagtctccattgcggatgctct 4448163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 112 - 245
Target Start/End: Original strand, 14884668 - 14884801
Alignment:
Q  112 ttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaaga 211  Q
    ||||| || |||||||  ||||||||| ||||||| ||||||| |||||||||||||||||||||||| ||| |||||||||||||  || |||||||||    
T  14884668 ttttgttaaagggtcttcattggagtggttgagtacctattaggtactattattaaaaaattattaaaaagtgatgtgtcaatgtggtactcatttaaga 14884767  T
Q  212 ttttaaagatgaaaatctccattgtggatgctct 245  Q
      | |||||||| | |||||||||| ||||||||    
T  14884768 cctcaaagatgagagtctccattgtagatgctct 14884801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 93 - 206
Target Start/End: Original strand, 50270778 - 50270891
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtca 192  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||  ||||||  ||||||| ||||||| |||||||||||||||| ||| ||||||||    
T  50270778 ggtgggacccaattagaccttttgttagagggtctctattggagtagttgagtgcctattaggtactattgttaaaaaattattaaaaagtgatgtgtca 50270877  T
Q  193 atgtgcgacccatt 206  Q
    | |||  |||||||    
T  50270878 aggtggaacccatt 50270891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 32913925 - 32914024
Alignment:
Q  112 ttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaaga 211  Q
    ||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| | | ||||||  ||||| ||||| |||||||    
T  32913925 ttttgttagaggttctctattggagtgattgagtacctattagatactattattaaaaaattataaaaaaatgatgtgtatatgtgagacccgtttaaga 32914024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 140 - 245
Target Start/End: Original strand, 23740165 - 23740270
Alignment:
Q  140 ttgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaagattttaaagatgaaaatctccattgtgga 239  Q
    ||||||| || |||| || ||||||||||||||||||||| ||| ||||||||||||| |||||||||||||  | |||||||| | |||||||||||||    
T  23740165 ttgagtacctgttaggtattattattaaaaaattattaaaaagtgatgtgtcaatgtgggacccatttaagacctcaaagatgagagtctccattgtgga 23740264  T
Q  240 tgctct 245  Q
     |||||    
T  23740265 agctct 23740270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 234
Target Start/End: Complemental strand, 45467736 - 45467596
Alignment:
Q  94 gtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaa 193  Q
    ||||||||  ||||||| ||||| |||||| ||||||||| |||| |||| || |||||| ||||||||||||||||||||||||| | | |||| || |    
T  45467736 gtgggaccctattagacattttgttagaggatctctattgaagtggttgaatacctattaaatactattattaaaaaattattaaaaaatgatgtatcca 45467637  T
Q  194 tgtgcgacccatttaagattttaaagatgaaaatctccatt 234  Q
    ||||  |||||||||||| || |||| |||  |||||||||    
T  45467636 tgtggaacccatttaagacttaaaagttgaggatctccatt 45467596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 119 - 245
Target Start/End: Complemental strand, 31206384 - 31206259
Alignment:
Q  119 agagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaagattttaaa 218  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||| |||||||| ||| ||| ||||||| ||||| |||  ||||||||  ||||     
T  31206384 agagggtctctattggagtggttgagtatttattagatactattatta-aaaattataaaaaagtgatgtgtctatgtgagacttatttaagaccttaag 31206286  T
Q  219 gatgaaaatctccattgtggatgctct 245  Q
      ||||  |||| ||||||||||||||    
T  31206285 attgaaggtctctattgtggatgctct 31206259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 94 - 208
Target Start/End: Complemental strand, 38865453 - 38865340
Alignment:
Q  94 gtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaa 193  Q
    ||||||||  ||||||||||||| |||||| |||| ||||||||| || |||| ||||||  ||||||||||||| |||||||||| | ||||||||| |    
T  38865453 gtgggaccctattagaccttttgttagaggatctcaattggagtggttaagtacctattaagtactattattaaagaattattaaaaaataatgtgtcca 38865354  T
Q  194 tgtgcgacccattta 208  Q
    |||| ||||||||||    
T  38865353 tgtg-gacccattta 38865340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 93 - 245
Target Start/End: Complemental strand, 15457118 - 15456966
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtca 192  Q
    |||||||||||  ||||||||||| | |||||| || ||||||||| |||||||  |||||| |||||||||||||||||||| ||| ||| |||| ||     
T  15457118 ggtgggacctatatagaccttttgttggagggtgtccattggagtggttgagtacatattaggtactattattaaaaaattataaaaaagtgatgtatcc 15457019  T
Q  193 atgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctct 245  Q
    ||||| ||||| ||| |||  |  ||  ||||| ||| |||||||||||||||    
T  15457018 atgtgagacccgtttcagacctccaaattgaaagtcttcattgtggatgctct 15456966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 93 - 237
Target Start/End: Original strand, 44415939 - 44416082
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtca 192  Q
    ||||||||| |||||||| ||||| ||||||||||   |||||||| || |||||| |||||| ||||||||| |||||| |||||| ||| ||||||||    
T  44415939 ggtgggacccaattagacattttgttagagggtcttcgttggagtggtttagtatccattagacactattatt-aaaaatgattaaaaagtgatgtgtca 44416037  T
Q  193 atgtgcgacccatttaagattttaaagatgaaaatctccattgtg 237  Q
    ||||   ||| ||||||||  | |||||||| | |||||||||||    
T  44416038 atgtagaacctatttaagacctcaaagatgagagtctccattgtg 44416082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 245
Target Start/End: Original strand, 3582751 - 3582906
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaatta---ttaaatagtaatgtg 189  Q
    |||| |||||| ||| |||||||| |||||| |||  ||||||||| ||||||| ||||||||||||||||||||||||| |     ||| |||||||||    
T  3582751 ggtgagacctatttaaaccttttgatagaggatctacattggagtggttgagtacctattagatactattattaaaaaataaaataaaaaaagtaatgtg 3582850  T
Q  190 tcaatgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctct 245  Q
    || ||||| |||   |||||||  ||||| ||||   |||||||||||||||||||    
T  3582851 tccatgtgggacatgtttaagaccttaaatatgagggtctccattgtggatgctct 3582906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 14396046 - 14395977
Alignment:
Q  103 aattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaat 172  Q
    ||||| |||||||| ||||||||||||||||||||| || |||| ||||||| |||||||||||||||||    
T  14396046 aattaaaccttttgttagagggtctctattggagtggttaagtacctattaggtactattattaaaaaat 14395977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 5300458 - 5300573
Alignment:
Q  94 gtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaa 193  Q
    ||||||||  ||||||||||||| |||||| |||  ||||||||  ||||||| ||||||  |||||||||||||||| ||||||| ||| ||||||| |    
T  5300458 gtgggaccctattagaccttttgttagaggatcttcattggagtagttgagtacctattaagtactattattaaaaaaatattaaaaagtgatgtgtcca 5300557  T
Q  194 tgtgcgacccatttaa 209  Q
    | || ||| |||||||    
T  5300558 tatgagactcatttaa 5300573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 93 - 188
Target Start/End: Complemental strand, 42483782 - 42483687
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgt 188  Q
    ||||||||| | |||||  ||||| ||||||||||| |||||| |||||||||   ||||||||||| ||||||||||||||| ||||||| ||||    
T  42483782 ggtgggacccagttagatattttgttagagggtctccattggaatgattgagtgcttattagatactgttattaaaaaattataaaatagtgatgt 42483687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 211
Target Start/End: Original strand, 1774958 - 1775064
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgaccca 204  Q
    |||||||||||| ||| || | |  ||||||||| ||||||| ||||||||||||||||||||||||| || ||| ||| |||| || ||||| |||||     
T  1774958 ttagaccttttgatagtggatttacattggagtggttgagtacctattagatactattattaaaaaataataaaaaagtgatgtttccatgtgtgacccg 1775057  T
Q  205 tttaaga 211  Q
    |||||||    
T  1775058 tttaaga 1775064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 6704223 - 6704142
Alignment:
Q  130 attggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaagat 212  Q
    ||||||||| ||||||| |||||| |||||||||||| |||||||||||| ||| | ||||| ||||| ||||||||||||||    
T  6704223 attggagtggttgagtacctattaaatactattatta-aaaattattaaaaagtgacgtgtccatgtgagacccatttaagat 6704142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 247
Target Start/End: Complemental strand, 43177906 - 43177764
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgaccca 204  Q
    |||||||||||| ||||   |||||||||||||| || |||| ||||||||| ||||||||||||||| || ||| ||| || |||| ||||| || ||     
T  43177906 ttagaccttttgatagaatatctctattggagtggtttagtacctattagatgctattattaaaaaataataaaaaagtgatctgtccatgtgggatccg 43177807  T
Q  205 tttaagattttaaagatgaaaatctccattgtggatgctctta 247  Q
    |||||||  | |||  |||   |||||||||||||||||||||    
T  43177806 tttaagacctcaaatgtgagggtctccattgtggatgctctta 43177764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 19512931 - 19513012
Alignment:
Q  130 attggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaaga 211  Q
    ||||||||| ||||||| ||||||  || ||||||||||||||||||||| | | || |||| |||||||||||||||||||    
T  19512931 attggagtggttgagtacctattaagtattattattaaaaaattattaaaaaatgatatgtccatgtgcgacccatttaaga 19513012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 42401048 - 42401145
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgt 190  Q
    ||||||||| | ||||||||||||  |||||||||| |||||||||| |||||   |||||| |||| ||||||||||||||| ||| ||| ||||||    
T  42401048 ggtgggaccgatttagaccttttgtcagagggtctccattggagtgactgagtgcttattaggtactgttattaaaaaattataaaagagtgatgtgt 42401145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 8779731 - 8779655
Alignment:
Q  171 attattaaatagtaatgtgtcaatgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctctta 247  Q
    ||||||||| | |||||||||||||||  ||||||||||||| | ||| |||| | |||||||||||||||||||||    
T  8779731 attattaaaaaataatgtgtcaatgtggaacccatttaagatctcaaatatgagagtctccattgtggatgctctta 8779655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 175
Target Start/End: Original strand, 7789778 - 7789841
Alignment:
Q  112 ttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattat 175  Q
    ||||| || ||| |||||||||||||||||||||  |||||| |||||||||||||||||||||    
T  7789778 ttttgttaaaggttctctattggagtgattgagtgcctattaaatactattattaaaaaattat 7789841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 33259495 - 33259432
Alignment:
Q  109 accttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaat 172  Q
    |||||||| || ||||| |||||||||||||||||||| ||||||  |||||||||||||||||    
T  33259495 accttttgttacagggtttctattggagtgattgagtacctattatgtactattattaaaaaat 33259432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 33279654 - 33279591
Alignment:
Q  109 accttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaat 172  Q
    |||||||| || ||||| |||||||||||||||||||| ||||||  |||||||||||||||||    
T  33279654 accttttgttacagggtttctattggagtgattgagtacctattatgtactattattaaaaaat 33279591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 42489051 - 42489117
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaa 171  Q
    ||||||| |||| |||||| |||||||||||||| | ||||| ||||||| ||||||||||||||||    
T  42489051 ttagaccatttgatagaggatctctattggagtggtcgagtacctattaggtactattattaaaaaa 42489117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 246
Target Start/End: Original strand, 5827593 - 5827734
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgaccca 204  Q
    |||||||||||| ||| || |||| ||||||||| || |||| ||||||  ||| |||| |||||||| || ||| ||| ||||||| ||||| |||||     
T  5827593 ttagaccttttgataggggatctccattggagtggttcagtacctattaagtaccattactaaaaaataataaaaaagtgatgtgtccatgtgagacccg 5827692  T
Q  205 tttaagattttaaagatgaaaatctccattgtggatgctctt 246  Q
    ||||| |  | |||  ||| | ||||||||||||||||||||    
T  5827693 tttaaaacctcaaatgtgagagtctccattgtggatgctctt 5827734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 5041016 - 5040953
Alignment:
Q  112 ttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattat 175  Q
    ||||| || ||| |||||||| ||||||||||||| ||||||| |||||||||| |||||||||    
T  5041016 ttttgttacaggctctctattagagtgattgagtacctattaggtactattattgaaaaattat 5040953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 33726945 - 33726878
Alignment:
Q  123 ggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgt 190  Q
    ||||| ||||||||||| |||||| |||||||||||| |||||||||||| || ||| ||| ||||||    
T  33726945 ggtctttattggagtgaatgagtacctattagatactgttattaaaaaataataaaaaagtgatgtgt 33726878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 247
Target Start/End: Complemental strand, 35615550 - 35615397
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtca 192  Q
    ||||||||| | |||||| ||||  || |||||||  |||| |||| |||||||  |||||| |||||||||||||||| || |||| | | ||||||||    
T  35615550 ggtgggacccatttagacattttattaaagggtcttcattgaagtggttgagtacttattaggtactattattaaaaaa-taataaaaaatgatgtgtca 35615452  T
Q  193 atgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctctta 247  Q
     ||||  | ||||||||||  | |||| |||   |||||||||||||||||||||    
T  35615451 ttgtggaatccatttaagacctcaaagttgagggtctccattgtggatgctctta 35615397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 47783691 - 47783647
Alignment:
Q  131 ttggagtgattgagtatctattagatactattattaaaaaattat 175  Q
    ||||||||||||||| | ||||| |||||||||||||||||||||    
T  47783691 ttggagtgattgagtgtttattaaatactattattaaaaaattat 47783647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 44240493 - 44240415
Alignment:
Q  112 ttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgt 190  Q
    ||||| |||||| |||| |||| |||  ||||||| |||||| |||||||||||||||||| || ||| ||| ||||||    
T  44240493 ttttgatagaggatctccattgaagtagttgagtacctattaaatactattattaaaaaataataaaaaagtgatgtgt 44240415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 32451796 - 32451716
Alignment:
Q  131 ttggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaaga 211  Q
    ||||||||||||| |   |||||| || || |||||||||||||| || |||| |||||| || ||| |||||||||||||    
T  32451796 ttggagtgattgaatgcttattaggtattactattaaaaaattataaattagtgatgtgtaaacgtgagacccatttaaga 32451716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 95 - 240
Target Start/End: Original strand, 27816496 - 27816641
Alignment:
Q  95 tgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaat 194  Q
    |||||||||||||||| ||||| ||||||||||| |||||||||||| |||| |||||||||||||||||| ||||||||||||| | | ||||||||||    
T  27816496 tgggacctaattagacattttgttagagggtctccattggagtgatttagtacctattagatactattatttaaaaattattaaagaatgatgtgtcaat 27816595  T
Q  195 gtgcgacccatttaagattttaaagatgaaaatctccattgtggat 240  Q
     || ||| |||||||||  | ||||| |||| ||||||||||||||    
T  27816596 atgagactcatttaagacctcaaagaagaaagtctccattgtggat 27816641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 42710550 - 42710459
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgt 196  Q
    |||||||||||| |||||||||||||||| ||||||||| || |||||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  42710550 ttagaccttttgttagagggtctctattgaagtgattgaatacctattaaatactattattaaaaaattataaaaaagtaatgtgtcaatgt 42710459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 93 - 241
Target Start/End: Complemental strand, 41003444 - 41003296
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtca 192  Q
    ||||||||  ||||||| |||||| ||||||||||| ||||||||| ||| ||| ||||||  ||||||| |||||||||||||||| ||| ||||||||    
T  41003444 ggtgggactcaattagatcttttgttagagggtctccattggagtggttgggtacctattaattactattgttaaaaaattattaaaaagtgatgtgtca 41003345  T
Q  193 atgtgcgacccatttaagattttaaagatgaaaatctccattgtggatg 241  Q
    | ||  |||| |||||||| || ||| |||| | |||||||||||||||    
T  41003344 aggtaggacctatttaagacttcaaatatgagagtctccattgtggatg 41003296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 244
Target Start/End: Complemental strand, 46209090 - 46208940
Alignment:
Q  94 gtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaa 193  Q
    ||||||||  ||||||||||||| |||||| |||| ||||||||| ||| ||| |||||| ||| ||||||||||||||||||||| ||| |||| |  |    
T  46209090 gtgggaccctattagaccttttgttagaggatctccattggagtggttgggtacctattaaatattattattaaaaaattattaaaaagtgatgttttca 46208991  T
Q  194 tgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctc 244  Q
    ||||  || |||||||||  | |||| |||  |||||||||||||||||||    
T  46208990 tgtggaactcatttaagacctcaaagttgaggatctccattgtggatgctc 46208940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 105 - 245
Target Start/End: Complemental strand, 25795886 - 25795745
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattatt-aaaaaattattaaatagtaatgtgtcaatgtgcgaccc 203  Q
    |||||||||||| |||||| |||||||||||||| ||||||| ||||||| |||||| ||| |||||||||| ||| | ||| ||||||||||| |||||    
T  25795886 ttagaccttttgttagaggatctctattggagtggttgagtacctattaggtactatcattaaaaaaattatgaaaaaataacgtgtcaatgtgggaccc 25795787  T
Q  204 atttaagattttaaagatgaaaatctccattgtggatgctct 245  Q
     |||||||| | |||  |||| ||||| ||||| ||| ||||    
T  25795786 gtttaagatctcaaaattgaagatctctattgtagatactct 25795745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 242
Target Start/End: Complemental strand, 10249110 - 10248962
Alignment:
Q  95 tgggacctaattagaccttttgctagagggtctctattggagtgattgagtatc-tattagatactattattaaaaaattattaaatagtaatgtgtcaa 193  Q
    |||||||  ||||||||||||| |||||| |||| ||||||||| ||||||| | |||||  || ||||||||||||||||||||| ||| ||||||| |    
T  10249110 tgggaccctattagaccttttgttagaggatctccattggagtggttgagtaccctattaagtattattattaaaaaattattaaaaagtgatgtgtcca 10249011  T
Q  194 tgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgc 242  Q
    | || |||||||||||||  | |||| |||   ||||||||||||||||    
T  10249010 tatgggacccatttaagacctcaaagttgagggtctccattgtggatgc 10248962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 245
Target Start/End: Complemental strand, 17603873 - 17603739
Alignment:
Q  111 cttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaag 210  Q
    ||||||||||||||| |||||||||||| ||||||| |||||||  ||||| ||||||||||||| ||| | | | ||||||||||| ||||| |||||     
T  17603873 cttttgctagagggtatctattggagtggttgagtacctattagtcactatcattaaaaaattataaaaaaatgacgtgtcaatgtgggacccgtttaat 17603774  T
Q  211 attttaaagatgaaaatctccattgtggatgctct 245  Q
    || | |||  |||   |||||||||||||||||||    
T  17603773 atctcaaaattgagggtctccattgtggatgctct 17603739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 243
Target Start/End: Complemental strand, 5532836 - 5532685
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaa-aaaattattaaatagtaatgtgtc 191  Q
    |||||| |||| |||||||||||| | |||| |||| |||| |||| ||||||| |||||||||||||||||||| ||||| || ||| ||| |||||||    
T  5532836 ggtgggtcctatttagaccttttgttggaggatctccattgtagtggttgagtacctattagatactattattaaaaaaataataaaaaagtgatgtgtc 5532737  T
Q  192 aatgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgct 243  Q
    ||| ||  |||||||||| |  | |||| |||   |||||||||||||||||    
T  5532736 aatatggaacccatttaaaacctcaaagttgagggtctccattgtggatgct 5532685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 33987801 - 33987899
Alignment:
Q  94 gtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtca 192  Q
    |||||| | |||||||| ||||| |||||||| |  |||| |||| ||||||| |||||| ||||||||||||||||||||||||| ||| ||||||||    
T  33987801 gtgggatccaattagacattttgttagagggtattcattgaagtggttgagtacctattaaatactattattaaaaaattattaaaaagtgatgtgtca 33987899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 30224753 - 30224853
Alignment:
Q  111 cttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaag 210  Q
    |||||| ||||| ||||| ||| ||||| ||||||| ||||||| ||||||||||||||||| || ||| ||| ||||||| ||||| || |||||||||    
T  30224753 cttttgttagagagtctccattagagtggttgagtacctattaggtactattattaaaaaataataaaaaagtgatgtgtccatgtgagatccatttaag 30224852  T
Q  211 a 211  Q
    |    
T  30224853 a 30224853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 111 - 210
Target Start/End: Original strand, 23307837 - 23307936
Alignment:
Q  111 cttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaag 210  Q
    |||||| |||||| |||||||||||||| ||||||| ||||||  ||||| ||||||||||| || ||| |||||||| || |||||  |||||||||||    
T  23307837 cttttgatagaggatctctattggagtgcttgagtacctattatgtactaatattaaaaaataataaaaaagtaatgtatccatgtgaaacccatttaag 23307936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 33815992 - 33815918
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaa 179  Q
    |||||| ||||| |||||| ||||||||| ||||||||||| | ||||||||||| ||||||||| |||||||||    
T  33815992 ttagacattttgttagaggatctctattgtagtgattgagtgtttattagatactgttattaaaatattattaaa 33815918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 37503941 - 37504008
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaat 172  Q
    |||||| ||||| | |||| |||| ||||||||| ||||||| |||||||||||||||||||||||||    
T  37503941 ttagactttttgatggaggatctccattggagtggttgagtacctattagatactattattaaaaaat 37504008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 958072 - 957986
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtc 191  Q
    |||||||||||| |||||| |||  ||||||||| || |||| ||||||| ||||||||||||||||| || ||| ||| |||||||    
T  958072 ttagaccttttgatagaggatcttcattggagtggttaagtacctattaggtactattattaaaaaataataaaaaagtgatgtgtc 957986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 22074306 - 22074383
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaa 170  Q
    ||||||||| |  ||||||||||| || ||||| || ||||||||| ||||||||||||||  |||||||||||||||    
T  22074306 ggtgggacccatatagaccttttgttatagggtttccattggagtggttgagtatctattatgtactattattaaaaa 22074383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 9153794 - 9153849
Alignment:
Q  156 tactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaaga 211  Q
    |||||||||||||||||||||||| ||| ||||||| ||||| ||| |||||||||    
T  9153794 tactattattaaaaaattattaaaaagtgatgtgtccatgtgggacacatttaaga 9153849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 33882110 - 33882177
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaat 172  Q
    |||||| ||||| |||||| |||| |||| |||| ||||||| ||||||| |||||||||||||||||    
T  33882110 ttagactttttgatagaggatctccattgaagtggttgagtacctattaggtactattattaaaaaat 33882177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 43302157 - 43302112
Alignment:
Q  130 attggagtgattgagtatctattagatactattattaaaaaattat 175  Q
    |||||||||||||||||| |||||| ||||| ||||||||||||||    
T  43302157 attggagtgattgagtatttattaggtactactattaaaaaattat 43302112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 44484009 - 44483913
Alignment:
Q  149 tattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctct 245  Q
    |||||||||||||||||||||||| || ||| | | ||||||| ||||| ||||| ||||| | ||||||  ||||  |||||||| | ||||||||    
T  44484009 tattagatactattattaaaaaataataaaaaaatgatgtgtccatgtgggacccgtttaaaactttaaatgtgaaggtctccattatagatgctct 44483913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 42988370 - 42988433
Alignment:
Q  148 ctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaaga 211  Q
    ||||||||||||||||||||||||| || ||| ||| ||||| ||||||| ||||  |||||||    
T  42988370 ctattagatactattattaaaaaataataaaaaagtgatgtgccaatgtgtgacctgtttaaga 42988433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 9486878 - 9486812
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaa 171  Q
    |||||| ||||| || ||||||| ||||| ||||||||||||  |||||| |||| |||||||||||    
T  9486878 ttagacattttgttatagggtctttattgcagtgattgagtacttattaggtactgttattaaaaaa 9486812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 17000589 - 17000535
Alignment:
Q  134 gagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgt 188  Q
    |||||| |||||| ||||||||| ||||||||||||||| |||||| | ||||||    
T  17000589 gagtgaatgagtacctattagatgctattattaaaaaataattaaaaaataatgt 17000535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 39837652 - 39837566
Alignment:
Q  125 tctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaaga 211  Q
    ||||| |||||||| |||| || ||||||| ||||||||||||||| | || ||| ||| ||| ||| ||||| ||||| |||||||    
T  39837652 tctctgttggagtggttgaatacctattaggtactattattaaaaagtaataaaaaagtgatgcgtccatgtgtgacccgtttaaga 39837566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 36656647 - 36656602
Alignment:
Q  130 attggagtgattgagtatctattagatactattattaaaaaattat 175  Q
    ||||||| |||||||||| |||||||||| | ||||||||||||||    
T  36656647 attggagggattgagtatttattagataccactattaaaaaattat 36656602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 4958328 - 4958372
Alignment:
Q  131 ttggagtgattgagtatctattagatactattattaaaaaattat 175  Q
    |||||| |||||||| | |||||||||||| ||||||||||||||    
T  4958328 ttggagggattgagtgtttattagatactactattaaaaaattat 4958372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 5355965 - 5356013
Alignment:
Q  124 gtctctattggagtgattgagtatctattagatactattattaaaaaat 172  Q
    |||||||||||| ||| |||||| ||||||| |||| ||||||||||||    
T  5355965 gtctctattggaatgaatgagtacctattaggtactgttattaaaaaat 5356013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 36655732 - 36655848
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtca 192  Q
    |||||| |||| |||||| ||||| | |||| ||||  ||  |||| ||||||| |  |||| ||||||||||||||||| |||||| | | ||||||||    
T  36655732 ggtgggtcctatttagacattttgttggaggatctccgttttagtggttgagtaccagttaggtactattattaaaaaataattaaaaaatgatgtgtca 36655831  T
Q  193 atgtgcgacccatttaa 209  Q
    || ||  ||||||||||    
T  36655832 atatggaacccatttaa 36655848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 93 - 248
Target Start/End: Original strand, 2347 - 2502
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtca 192  Q
    |||| |||| |||||||||||||| ||||||||||| ||||||||| ||||||| ||||||| |||||||||||||| |||||||||  || |||||||     
T  2347 ggtgcgacccaattagaccttttgttagagggtctccattggagtggttgagtacctattaggtactattattaaaatattattaaaatgtgatgtgtct 2446  T
Q  193 atgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctcttaa 248  Q
    ||||| ||||||||||| |  | |||||||| | |||||||||||||| |||||||    
T  2447 atgtgggacccatttaaaacctcaaagatgagagtctccattgtggattctcttaa 2502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 93 - 245
Target Start/End: Original strand, 45064223 - 45064374
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtca 192  Q
    ||||||||| |||||||||||||| |||||| |||| |||| ||||  |||||| ||||||| |||||||||||||||||||||||| ||| ||||||||    
T  45064223 ggtgggacccaattagaccttttgttagaggatctccattg-agtggctgagtacctattaggtactattattaaaaaattattaaaaagtgatgtgtca 45064321  T
Q  193 atgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctct 245  Q
    ||||| ||| |||||||||  | |||||||  | |||||||||||||||||||    
T  45064322 atgtgagactcatttaagacctcaaagatgtgagtctccattgtggatgctct 45064374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 93 - 247
Target Start/End: Original strand, 40047021 - 40047174
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtca 192  Q
    ||||||||| ||||| || ||||| |||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| | | ||||||||    
T  40047021 ggtgggacccaattaaactttttgttagagggtctctattgaagtggttgagtatctattaggtactattattaaaaaattattaaaaaatgatgtgtca 40047120  T
Q  193 atgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctctta 247  Q
    ||||| || ||||| || | || ||| |||| | ||||||||||||||| |||||    
T  40047121 atgtggga-ccattcaaaacttcaaaaatgagagtctccattgtggatgttctta 40047174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 245
Target Start/End: Complemental strand, 22425067 - 22424940
Alignment:
Q  118 tagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaagattttaa 217  Q
    |||||||||| | |||||||| ||||||| ||||||| |||||||||||||||||||| ||| ||| ||||||| |||||  ||| ||||||||  | ||    
T  22425067 tagagggtctgtgttggagtggttgagtacctattaggtactattattaaaaaattatcaaaaagtgatgtgtccatgtggaacctatttaagacctcaa 22424968  T
Q  218 agatgaaaatctccattgtggatgctct 245  Q
    || ||||  |||||||||||||||||||    
T  22424967 agttgaaggtctccattgtggatgctct 22424940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 103 - 245
Target Start/End: Original strand, 39193296 - 39193439
Alignment:
Q  103 aattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacc 202  Q
    ||||||| |||||| ||||||||||| ||||||||| ||||||| ||||||| ||| ||| |||||||||||||||| ||| |||||||||| || |||     
T  39193296 aattagatcttttgttagagggtctccattggagtggttgagtaactattaggtaccattgttaaaaaattattaaaaagtgatgtgtcaatatgagact 39193395  T
Q  203 catttaagattttaaagatgaaaatct-ccattgtggatgctct 245  Q
    |||||| ||  | ||| |||| | ||| ||||||||||||||||    
T  39193396 catttatgacctaaaaaatgagagtctcccattgtggatgctct 39193439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 241
Target Start/End: Complemental strand, 3161815 - 3161669
Alignment:
Q  95 tgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaat 194  Q
    ||||||||| |||||| |||||  ||| ||||| ||||||||||| |||||| ||||||| |||| |||||||||||| || ||| ||||||||||  |     
T  3161815 tgggacctatttagactttttgtcagaaggtctttattggagtgaatgagtacctattaggtactgttattaaaaaataataaaaaagtaatgtgtacaa 3161716  T
Q  195 gtgcgacccatttaagattttaaagatgaaaatctccattgtggatg 241  Q
    ||| |||||||||||||  || ||  |||  ||||||||||||||||    
T  3161715 gtgggacccatttaagaccttcaaattgaggatctccattgtggatg 3161669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 247
Target Start/End: Original strand, 2062437 - 2062550
Alignment:
Q  134 gagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaagattttaaagatgaaaatctccat 233  Q
    ||||| ||||||| ||||||  ||||||||||||||||| |||||  ||||||||||| ||||  ||||| ||||||| || |||| ||||| | |||||    
T  2062437 gagtggttgagtacctattaagtactattattaaaaaatcattaagaagtaatgtgtccatgtaggacccttttaagacttcaaagttgaaagtttccat 2062536  T
Q  234 tgtggatgctctta 247  Q
    ||||||||||||||    
T  2062537 tgtggatgctctta 2062550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 37247281 - 37247196
Alignment:
Q  94 gtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaa 179  Q
    ||||||||  ||||||||||||| || ||| |||| ||||||||| ||||||| |||||| || ||||||||||||||||||||||    
T  37247281 gtgggaccntattagaccttttgttaaaggatctccattggagtggttgagtacctattaaatgctattattaaaaaattattaaa 37247196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 95 - 244
Target Start/End: Complemental strand, 40757895 - 40757745
Alignment:
Q  95 tgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaat-tattaaatagtaatgtgtcaa 193  Q
    ||||||| |||||||||||||  ||||||||||| |||  |||| |||||||  |||||| || | |||||||||||  ||||||| ||| |||||||||    
T  40757895 tgggacccaattagaccttttattagagggtctccattaaagtggttgagtacatattaggtattcttattaaaaaaaatattaaaaagttatgtgtcaa 40757796  T
Q  194 tgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctc 244  Q
    |||| ||| |||||||||  | |||||||| | ||| ||| ||||||||||    
T  40757795 tgtgagactcatttaagacctcaaagatgagagtcttcatcgtggatgctc 40757745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 51997249 - 51997367
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtca 192  Q
    |||||| |||| |||||||||||| |  ||| |||| |||| |||| ||||||| ||||||| ||||||||||||||||| || ||| ||| |||||| |    
T  51997249 ggtgggtcctatttagaccttttgttgaaggatctccattgtagtggttgagtacctattaggtactattattaaaaaataataaaaaagtgatgtgtta 51997348  T
Q  193 atgtgcgacccatttaaga 211  Q
    ||||| || ||||||||||    
T  51997349 atgtgggatccatttaaga 51997367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 245
Target Start/End: Complemental strand, 6076760 - 6076608
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtca 192  Q
    ||||||||| | |||||| ||||| |||| | ||||||||||||||| |||||| ||||||| ||||||||||| ||||| || ||| ||| ||||||      
T  6076760 ggtgggacccatttagactttttgttagaagatctctattggagtgactgagtacctattaggtactattattataaaataataaaaaagtgatgtgtac 6076661  T
Q  193 atgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctct 245  Q
    | ||| ||||| |||||||  || ||  |||   |||||||||||||||||||    
T  6076660 aagtgggacccgtttaagaccttcaatttgagggtctccattgtggatgctct 6076608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 211
Target Start/End: Original strand, 36219126 - 36219242
Alignment:
Q  95 tgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaat 194  Q
    ||||||| | |||||| ||||| |||| | |||| ||||||||||||||||| ||||||| ||||||||||||||||| || ||| ||| |||| |  ||    
T  36219126 tgggacccatttagacattttgatagatgatctccattggagtgattgagtacctattaggtactattattaaaaaataataaaaaagtgatgtattcat 36219225  T
Q  195 gtgcgacccatttaaga 211  Q
    ||| ||||| |||||||    
T  36219226 gtgagacccgtttaaga 36219242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 29628001 - 29627922
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaat 172  Q
    ||||||||||| |||||| ||||| |||||| |||  ||||||||| ||||||| |||||||||||||| ||||||||||    
T  29628001 ggtgggacctatttagacattttgatagaggatcttcattggagtggttgagtacctattagatactatgattaaaaaat 29627922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 40946247 - 40946184
Alignment:
Q  109 accttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaat 172  Q
    |||||||| || |||||||||||||||||| ||||||| ||||||||| |||||||||||||||    
T  40946247 accttttgttaaagggtctctattggagtggttgagtacctattagatgctattattaaaaaat 40946184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 8757452 - 8757522
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattat 175  Q
    |||||| ||||| |||||| ||||||||||| || ||||||| |||||| |||||||||||||||||||||    
T  8757452 ttagacattttggtagaggatctctattggaatggttgagtacctattaaatactattattaaaaaattat 8757522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 249
Target Start/End: Original strand, 2128988 - 2129132
Alignment:
Q  97 ggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgt 196  Q
    ||||| ||||| | |||||| ||||||||||| ||| ||||||||||||| ||||||       ||||||||||||||| ||| | | ||||||||||||    
T  2128988 ggacccaattaaatcttttgttagagggtctccattagagtgattgagtacctatta-------ttattaaaaaattataaaaaa-tgatgtgtcaatgt 2129079  T
Q  197 gcgacccatttaagattttaaagatgaaaatctccattgtggatgctcttaac 249  Q
    | ||||  |||||||  | |||||||| | ||| |||||| ||||||||||||    
T  2129080 gggacctctttaagacctcaaagatgagagtcttcattgtagatgctcttaac 2129132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 32212765 - 32212711
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtat 147  Q
    ||||||||| | |||||||||||| ||||||||||||||||||||| ||||||||    
T  32212765 ggtgggacccatttagaccttttgttagagggtctctattggagtggttgagtat 32212711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 175
Target Start/End: Original strand, 25479779 - 25479842
Alignment:
Q  112 ttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattat 175  Q
    ||||| |||| | ||||||||| |||| |||||||  |||||||||||||||||||||||||||    
T  25479779 ttttgttagaagatctctattgaagtggttgagtacttattagatactattattaaaaaattat 25479842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 245
Target Start/End: Original strand, 26417275 - 26417389
Alignment:
Q  130 attggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaagattttaaagatgaaaatct 229  Q
    ||||||||| ||||||| ||||||| ||| |||||||||||| || |||| | | |||||| |||||| ||||| |||| ||  | ||| ||||  ||||    
T  26417275 attggagtggttgagtacctattaggtaccattattaaaaaa-taataaaaaatgatgtgttaatgtgagacccgtttatgacatcaaatatgaggatct 26417373  T
Q  230 ccattgtggatgctct 245  Q
    ||||||||||||||||    
T  26417374 ccattgtggatgctct 26417389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 45047177 - 45047114
Alignment:
Q  112 ttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattat 175  Q
    ||||| ||||||||||||||| ||||| ||||||| ||||||| |||||| ||||||| |||||    
T  45047177 ttttgttagagggtctctatttgagtggttgagtacctattaggtactatcattaaaatattat 45047114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 211
Target Start/End: Complemental strand, 34483600 - 34483484
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtca 192  Q
    ||||||||| | |||||| ||||| |||| | || | ||||||||| ||||||| |||||||||| | |||||||||||| || ||| ||| |||||||     
T  34483600 ggtgggacccatttagacattttgatagatgatcaccattggagtggttgagtacctattagatatt-ttattaaaaaataataaaa-agtgatgtgtcc 34483503  T
Q  193 atgtgcgacccatttaaga 211  Q
    |||||  ||||||||||||    
T  34483502 atgtgaaacccatttaaga 34483484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 23928238 - 23928191
Alignment:
Q  144 gtatctattagatactattattaaaaaattattaaatagtaatgtgtc 191  Q
    ||||||||||| |||||||||||||||||||| ||| ||| |||||||    
T  23928238 gtatctattaggtactattattaaaaaattataaaaaagtgatgtgtc 23928191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 51676888 - 51676955
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaat 172  Q
    |||||||||||| | |||| |||| |||| |||| ||||||| ||||||| | |||||||||||||||    
T  51676888 ttagaccttttgttggaggatctccattgtagtggttgagtacctattaggttctattattaaaaaat 51676955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 247
Target Start/End: Original strand, 30599805 - 30599947
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgaccca 204  Q
    |||||| |||||| | | |||||| |||||||||| |||||| || |||| |||| |||||||||||| || ||| ||| ||||||  | ||| ||| |     
T  30599805 ttagactttttgccataaggtctccattggagtgaatgagtaccttttaggtactgttattaaaaaataataaaaaagtgatgtgtacaagtgagactcg 30599904  T
Q  205 tttaagattttaaagatgaaaatctccattgtggatgctctta 247  Q
    |||||||  || ||  |||   |||||||||||||||||||||    
T  30599905 tttaagaccttcaaattgagggtctccattgtggatgctctta 30599947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 5834237 - 5834317
Alignment:
Q  130 attggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaaga 211  Q
    |||| |||||||||||| ||||||  |||||||| |||||||| || ||| ||| ||||||||||||| || | ||||||||    
T  5834237 attgcagtgattgagtacctattatgtactatta-taaaaaataataaaaaagtgatgtgtcaatgtgggatctatttaaga 5834317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 23359188 - 23359232
Alignment:
Q  131 ttggagtgattgagtatctattagatactattattaaaaaattat 175  Q
    |||||||||||||||   |||||||||||| ||||||||||||||    
T  23359188 ttggagtgattgagtgcttattagatactactattaaaaaattat 23359232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 42426928 - 42426884
Alignment:
Q  131 ttggagtgattgagtatctattagatactattattaaaaaattat 175  Q
    |||||| |||||||| | |||||||||||| ||||||||||||||    
T  42426928 ttggagggattgagtttttattagatactactattaaaaaattat 42426884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 94 - 245
Target Start/End: Complemental strand, 14728992 - 14728841
Alignment:
Q  94 gtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaa 193  Q
    ||||||||  ||||||||||||| |||||| |||||||||||||| ||||||| ||||||  || ||||||||||||||||||||| ||| ||||||| |    
T  14728992 gtgggaccctattagaccttttgttagaggatctctattggagtggttgagtacctattaagtattattattaaaaaattattaaaaagtgatgtgtcca 14728893  T
Q  194 tgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctct 245  Q
    |||| |||||||||||||  | |||| |||   |||||||||||||||||||    
T  14728892 tgtgagacccatttaagacctcaaagttgagggtctccattgtggatgctct 14728841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 93 - 246
Target Start/End: Complemental strand, 38901305 - 38901156
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtca 192  Q
    ||||||||| |||||||| ||||  ||||||||||| ||||||||| ||||||| ||||||| |||||||||||||||||||||||| ||| ||||||||    
T  38901305 ggtgggacccaattagactttttt-tagagggtctccattggagtggttgagtacctattaggtactattattaaaaaattattaaaaagtgatgtgtca 38901207  T
Q  193 atgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctctt 246  Q
    ||||| ||||||||   ||  | |||||||| | ||||||||||||||||||||    
T  38901206 atgtgggacccatt---gacctcaaagatgagagtctccattgtggatgctctt 38901156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 17793313 - 17793431
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtca 192  Q
    ||||||||| ||||| |||||||  || |||||||| ||| ||||| ||||||| ||||||| |||||||||||||||||||||||| ||| ||||||||    
T  17793313 ggtgggacccaattaaaccttttcttaaagggtctccatttgagtggttgagtacctattaggtactattattaaaaaattattaaaaagtgatgtgtca 17793412  T
Q  193 atgtgcgacccatttaaga 211  Q
    ||| | |||||||||||||    
T  17793413 atgagggacccatttaaga 17793431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 211
Target Start/End: Complemental strand, 7176770 - 7176653
Alignment:
Q  94 gtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaa 193  Q
    ||||||||  ||||||||||||| |||| | |||| ||||||||| ||||||| ||||||  |||||||||||||||||||||||| | | || |||  |    
T  7176770 gtgggaccctattagaccttttgttagaagatctccattggagtggttgagtacctattaagtactattattaaaaaattattaaaaaatgatatgttta 7176671  T
Q  194 tgtgcgacccatttaaga 211  Q
    |||| |||||||||||||    
T  7176670 tgtgggacccatttaaga 7176653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 105 - 209
Target Start/End: Original strand, 18807044 - 18807148
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgaccca 204  Q
    |||||||||||| |||||  |||||||||||||| |||||||||| || ||||||||||||||||||| || ||| ||| | ||||| ||||| |||||     
T  18807044 ttagaccttttgatagagaatctctattggagtggttgagtatctgttggatactattattaaaaaataataaaaaagtgaagtgtccatgtgagacccg 18807143  T
Q  205 tttaa 209  Q
    |||||    
T  18807144 tttaa 18807148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 26705837 - 26705731
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgaccca 204  Q
    |||||||||||  |||||| |||||||||||||| ||||||| ||||||| ||||||||||||||||| || ||| ||| |||| || ||||| || ||     
T  26705837 ttagaccttttaatagaggatctctattggagtggttgagtacctattaggtactattattaaaaaataataaaaaagtgatgtatccatgtgtgaaccg 26705738  T
Q  205 tttaaga 211  Q
    |||||||    
T  26705737 tttaaga 26705731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 37187590 - 37187662
Alignment:
Q  125 tctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtg 197  Q
    |||| |||| |||| ||||||| ||||||||||||||||||||||||| |||||| |||||| ||||||||||    
T  37187590 tctcaattgaagtggttgagtacctattagatactattattaaaaaataattaaaaagtaatatgtcaatgtg 37187662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 105 - 211
Target Start/End: Original strand, 10288091 - 10288198
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaat-tattaaatagtaatgtgtcaatgtgcgaccc 203  Q
    |||||||||||| |||||| |||  ||||||||| ||||||| ||||||| |||||||||||||||||  | |||| | ||||||||| ||||| |||||    
T  10288091 ttagaccttttgatagaggatcttcattggagtggttgagtacctattaggtactattattaaaaaataaaataaaaaataatgtgtccatgtgagaccc 10288190  T
Q  204 atttaaga 211  Q
     |||||||    
T  10288191 gtttaaga 10288198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 247
Target Start/End: Complemental strand, 31511413 - 31511291
Alignment:
Q  125 tctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaagattttaaagatgaa 224  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||| || ||| ||| |||| |  | ||| ||| | |||||||| || ||  | |     
T  31511413 tctctattggagtgaatgagtatctattagatactcttattaaaaaataataaaaaagtgatgtatataggtgagactcgtttaagatcttcaaattaag 31511314  T
Q  225 aatctccattgtggatgctctta 247  Q
    | |||||||||||||||||||||    
T  31511313 agtctccattgtggatgctctta 31511291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 30905618 - 30905531
Alignment:
Q  109 accttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgt 196  Q
    |||||||| | |||||||||||||| |||  |||| || ||||||| |||||||||||||||||||| ||| ||| ||||||| ||||    
T  30905618 accttttgtttgagggtctctattgtagttgttgaatacctattaggtactattattaaaaaattataaaaaagttatgtgtccatgt 30905531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 41123331 - 41123397
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaa 171  Q
    |||||||||||| |||| | |||| ||||||||| ||||||| |||||||||| |||||||||||||    
T  41123331 ttagaccttttgatagatgatctccattggagtggttgagtacctattagatagtattattaaaaaa 41123397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 245
Target Start/End: Complemental strand, 13629074 - 13628960
Alignment:
Q  131 ttggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaagattttaaagatgaaaatctc 230  Q
    |||||| |||||| ||  |||||||||||| |||||||||||||| ||  | | ||||||  ||||| |||||||||||||  | ||| ||| |  ||||    
T  13629074 ttggagggattgactacttattagatactactattaaaaaattataaatgaatgatgtgtacatgtgagacccatttaagaactcaaaaatggaggtctc 13628975  T
Q  231 cattgtggatgctct 245  Q
    |||||||||||||||    
T  13628974 cattgtggatgctct 13628960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 245
Target Start/End: Complemental strand, 13729486 - 13729372
Alignment:
Q  131 ttggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaagattttaaagatgaaaatctc 230  Q
    |||||| |||||| ||  |||||||||||| |||||||||||||| ||  | | ||||||  ||||| |||||||||||||  | ||| ||| |  ||||    
T  13729486 ttggagggattgactacttattagatactactattaaaaaattataaatgaatgatgtgtacatgtgagacccatttaagaactcaaaaatggaggtctc 13729387  T
Q  231 cattgtggatgctct 245  Q
    |||||||||||||||    
T  13729386 cattgtggatgctct 13729372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 14581279 - 14581202
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaa 170  Q
    ||||||||| ||||| |||||||| ||||||   ||| ||||| |  ||||||| |||||||||||||||||||||||    
T  14581279 ggtgggacccaattaaaccttttgatagaggaattctgttggactagttgagtacctattagatactattattaaaaa 14581202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 245
Target Start/End: Original strand, 7207036 - 7207176
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgaccca 204  Q
    |||||| ||||| |||| | ||||||||||||||| || ||| ||||||  |||| |||||| ||||| || ||| ||| ||||||  | ||| |||||     
T  7207036 ttagactttttgttagaagatctctattggagtgactgggtacctattaagtactgttattataaaataataaaaaagtgatgtgtacaagtgggacccg 7207135  T
Q  205 tttaagattttaaagatgaaaatctccattgtggatgctct 245  Q
    |||||||  || ||  |||  ||||||||||||||||||||    
T  7207136 tttaagaccttcaatttgatgatctccattgtggatgctct 7207176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 31226507 - 31226427
Alignment:
Q  131 ttggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaaga 211  Q
    |||||||| |||||||| |||||| ||||| |||||||||||||| ||  ||| ||||||  |||||  ||||||||||||    
T  31226507 ttggagtgtttgagtatttattaggtactactattaaaaaattataaatgagtgatgtgtacatgtgacacccatttaaga 31226427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 2603111 - 2603066
Alignment:
Q  130 attggagtgattgagtatctattagatactattattaaaaaattat 175  Q
    ||||||| |||||||||  |||||||||||| ||||||||||||||    
T  2603111 attggagggattgagtacttattagatactactattaaaaaattat 2603066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 7573153 - 7573092
Alignment:
Q  111 cttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaat 172  Q
    |||||| |||| | |||| |||| |||| ||||||| |||||| ||||||||||||||||||    
T  7573153 cttttgatagatgatctccattgtagtggttgagtacctattaaatactattattaaaaaat 7573092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 94 - 245
Target Start/End: Complemental strand, 11511994 - 11511843
Alignment:
Q  94 gtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaa 193  Q
    |||||||| | |||||||||||| |||||| |||||||||||||| ||||||| ||||||| ||||||||||||||||| |||||| ||| ||||||| |    
T  11511994 gtgggacccatttagaccttttgatagaggatctctattggagtggttgagtacctattaggtactattattaaaaaataattaaaaagtgatgtgtcca 11511895  T
Q  194 tgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctct 245  Q
    |||| ||||| |||||||  | ||| ||||   |||||||||||||||||||    
T  11511894 tgtgggacccgtttaagacctcaaatatgagtgtctccattgtggatgctct 11511843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 11915994 - 11916099
Alignment:
Q  106 tagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccat 205  Q
    ||||||||||| ||||||||||| ||||||||| ||||||| ||||||| |||||||||||||||||||| ||| ||||||||||| ||||| ||||| |    
T  11915994 tagaccttttgttagagggtctccattggagtggttgagtacctattaggtactattattaaaaaattataaaaaagtaatgtgtccatgtgagacccct 11916093  T
Q  206 ttaaga 211  Q
    ||||||    
T  11916094 ttaaga 11916099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 39445917 - 39446020
Alignment:
Q  109 accttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattat-taaatagtaatgtgtcaatgtgcgacccattt 207  Q
    |||||||| | ||||||||||||||||||| |||| || ||||||| |||||| |||||||||||||  ||| ||||| ||||||||||| ||||| |||    
T  39445917 accttttgttggagggtctctattggagtggttgaatacctattaggtactatcattaaaaaattataaaaaaagtaacgtgtcaatgtgggacccgttt 39446016  T
Q  208 aaga 211  Q
    ||||    
T  39446017 aaga 39446020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 448872 - 448806
Alignment:
Q  106 tagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaat 172  Q
    ||||| ||||| ||||| |||||||||| |||| ||||||| |||||||||||||||||||||||||    
T  448872 tagacattttgttagagagtctctattgaagtgtttgagtacctattagatactattattaaaaaat 448806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 247
Target Start/End: Complemental strand, 7772856 - 7772714
Alignment:
Q  106 tagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattat-taaatagtaatgtgtcaatgtgcgaccca 204  Q
    ||||||||||| | ||| ||||| |||| |||  ||||||| ||||||||||||||||||||||||||||  ||| | | ||||||| ||||| || ||     
T  7772856 tagaccttttgttggagagtctccattgcagttgttgagtacctattagatactattattaaaaaattataaaaaaaatgatgtgtccatgtgagatccg 7772757  T
Q  205 tttaagattttaaagatgaaaatctccattgtggatgctctta 247  Q
    |||||||  |||||  ||||  ||||||||||||| |||||||    
T  7772756 tttaagaccttaaaattgaaggtctccattgtggaggctctta 7772714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 197
Target Start/End: Complemental strand, 4062649 - 4062545
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtca 192  Q
    ||||||||| |  ||||||||||| | |||| |||| |||| |||  ||||||| |||||| ||||||||||||||||||||| ||| ||| |||||||     
T  4062649 ggtgggacccatatagaccttttgttggaggttctccattgtagttgttgagtacctattatatactattattaaaaaattataaaaaagtgatgtgtcc 4062550  T
Q  193 atgtg 197  Q
    |||||    
T  4062549 atgtg 4062545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 20683413 - 20683472
Alignment:
Q  112 ttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaa 171  Q
    ||||| |||||| |||| ||||||||||||||||| ||||||| ||||||||||||||||    
T  20683413 ttttgatagaggatctccattggagtgattgagtacctattaggtactattattaaaaaa 20683472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 248
Target Start/End: Complemental strand, 449114 - 448991
Alignment:
Q  125 tctctattggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaagattttaaagatgaa 224  Q
    |||| ||||||||| |||||||  |||||  |||||||||||||||| ||||||| ||| ||||||| ||||| ||| | |||||||  | |||| | |     
T  449114 tctccattggagtggttgagtacatattaagtactattattaaaaaaatattaaaaagttatgtgtccatgtgagactcgtttaagacctcaaagtttag 449015  T
Q  225 aatctccattgtggatgctcttaa 248  Q
    | | | ||||||||||||||||||    
T  449014 agtatgcattgtggatgctcttaa 448991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 27974486 - 27974419
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaat 172  Q
    |||||| ||||| || || |||||||||| |||| ||||||||||||||  |||||||||||||||||    
T  27974486 ttagacattttgttaaagagtctctattgaagtggttgagtatctattaagtactattattaaaaaat 27974419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 28061015 - 28060948
Alignment:
Q  105 ttagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaat 172  Q
    |||||| ||||| || || |||||||||| |||| ||||||||||||||  |||||||||||||||||    
T  28061015 ttagacattttgttaaagagtctctattgaagtggttgagtatctattaagtactattattaaaaaat 28060948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 247
Target Start/End: Original strand, 11922050 - 11922146
Alignment:
Q  151 ttagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaagattttaaagatgaaaatctccattgtggatgctctta 247  Q
    |||| ||||| |||||||||||||| ||  ||||||||||  | ||| ||||||||||||   ||||| ||||   |||||||||||||||||||||    
T  11922050 ttaggtactactattaaaaaattataaatgagtaatgtgtacacgtgagacccatttaagtaattaaaaatgagtgtctccattgtggatgctctta 11922146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 9973865 - 9973817
Alignment:
Q  123 ggtctctattggagtgattgagtatctattagatactattattaaaaaa 171  Q
    |||||||||||||||| ||| ||| ||||||| |||| |||||||||||    
T  9973865 ggtctctattggagtggttgggtacctattaggtactgttattaaaaaa 9973817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 26813 - 26734
Alignment:
Q  93 ggtgggacctaattagaccttttgctagagggtctctattggagtgattgagtatctattagatactattattaaaaaat 172  Q
    |||| |||| |||||||||||||| ||||||||||||||||||||| |||| || ||||||| |||||||||||||||||    
T  26813 ggtgagacccaattagaccttttgttagagggtctctattggagtggttgaatacctattaggtactattattaaaaaat 26734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 211
Target Start/End: Complemental strand, 10007 - 9926
Alignment:
Q  130 attggagtgattgagtatctattagatactattattaaaaaattattaaatagtaatgtgtcaatgtgcgacccatttaaga 211  Q
    ||||||||| ||||||| ||||||  || ||||||||||||||||||||| | | || |||| |||||||||||||||||||    
T  10007 attggagtggttgagtacctattaagtattattattaaaaaattattaaaaaatgatatgtccatgtgcgacccatttaaga 9926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 326 - 395
Alignment:
Q  109 accttttgctagagggtctctattggagtgattgagtatc---tattagatactattattaaaaaattat 175  Q
    |||||||||||||||||||||||||||||| ||||||| |   |||||| |||||| |||||||||||||    
T  326 accttttgctagagggtctctattggagtggttgagtacctaatattaggtactatcattaaaaaattat 395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University