View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18936_low_47 (Length: 316)
Name: NF18936_low_47
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_47 |
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| [»] scaffold0011 (2 HSPs) |
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| [»] scaffold0250 (1 HSPs) |
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| [»] scaffold0246 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 222347 - 222638
Alignment:
| Q |
18 |
aaaggtctcgcgctaataatggtgaggatcatatcatggcagagagaaagcgaagagagaaactcacccaaagcttcattgctcttgcagctcttgttcc |
117 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
222347 |
aaaggtctcgtgctaataatggtgaggatcatatcatggcagagagaaagcgaagagagaaactcacccaaagcttcattgctcttgcagctcttgttcc |
222446 |
T |
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| Q |
118 |
caaccttaaaaaggtaca--atgttatgaaatgattatatgcagttcaaagttaagggtattttggtgaaaaattatttaataca-gtttgaaaattgtt |
214 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
222447 |
caaccttaaaaaggtacaatatgttataaaatgattatatgcagttcaaagttaagggtattttggtgaaaaattatttaatgcatatttgaaaattgtt |
222546 |
T |
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| Q |
215 |
ttaaagaagtattataaaaatgacaagtaaaaaacgcataagagtcttatatttagagacgaagatattataatcttgattactttattcat |
306 |
Q |
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| T |
222547 |
ttaaagaagtattataaaaatgacaagtaaaaaacgcataagagtcttatatttagagacgaagatattataatcttgattactctattcat |
222638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 184458 - 184743
Alignment:
| Q |
18 |
aaaggtctcgcgctaataatggtgaggatcatatcatggcagagagaaagcgaagagagaaactcacccaaagcttcattgctcttgcagctcttgttcc |
117 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
184458 |
aaaggtctcgtgctaataatggtgaggatcatatcatggcagagagaaagcgaagagagaaactcacccaaagcttcattgctcttgcagctcttgttcc |
184557 |
T |
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| Q |
118 |
caaccttaaaaaggtacaatgttatgaaatgattatatgcagttcaaagttaagggtattttggtgaaaaattatttaataca-gtttgaaaattgtttt |
216 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
184558 |
caaccttaaaaaggtacaatgttataaaatgattatatgcagttcaaagttaagggtattttggtgaaaaattatttaatccatgtttgaaaattgtttt |
184657 |
T |
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| Q |
217 |
aaagaagtattataaaaatgacaagtaaaaaacgcataagagtcttatatttagagacgaagatattataatcttgattactttattcat |
306 |
Q |
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| T |
184658 |
aaagaagtattataaaaatgac----aaaaaacgcataagagtcttatatttagagacgaagatattataatcttgattactctattcat |
184743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 17115763 - 17115856
Alignment:
| Q |
44 |
gatcatatcatggcagagagaaagcgaagagagaaactcacccaaagcttcattgctcttgcagctcttgttcccaaccttaaaaaggtacaat |
137 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17115763 |
gatcatatcatggctgagagaaagagaagagagaaactcacccaaaacttcattgctcttgcagctcttgttcctaaccttaaaaaggtacaat |
17115856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 17125200 - 17125293
Alignment:
| Q |
44 |
gatcatatcatggcagagagaaagcgaagagagaaactcacccaaagcttcattgctcttgcagctcttgttcccaaccttaaaaaggtacaat |
137 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17125200 |
gatcatatcatggctgagagaaagagaagagagaaactcacccaaaacttcattgctcttgcagctcttgttcctaaccttaaaaaggtacaat |
17125293 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0250 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 15730 - 15845
Alignment:
| Q |
18 |
aaaggtctcgcgctaataatggtgaggatcatatcatggcagagagaaagcgaagagagaaactcacccaaagcttcattgctcttgcagctcttgttcc |
117 |
Q |
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|||||||||| | |||| ||||| | |||||||||||||| ||||||||| |||||||||||||||| || | ||||||||||||||||||||||||||| |
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| T |
15730 |
aaaggtctcgtggtaatcatggtcatgatcatatcatggctgagagaaagagaagagagaaactcacacagaacttcattgctcttgcagctcttgttcc |
15829 |
T |
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| Q |
118 |
caaccttaaaaaggta |
133 |
Q |
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||||||||||||||| |
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| T |
15830 |
taaccttaaaaaggta |
15845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 25113280 - 25113191
Alignment:
| Q |
44 |
gatcatatcatggcagagagaaagcgaagagagaaactcacccaaagcttcattgctcttgcagctcttgttcccaaccttaaaaaggta |
133 |
Q |
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||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
25113280 |
gatcacatcatggctgagagaaatcgaagagagaaactcacccaaagcttcattgctcttgcagctcttgttcctaaccttaagaaggta |
25113191 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 25239347 - 25239441
Alignment:
| Q |
43 |
ggatcatatcatggcagagagaaagcgaagagagaaactcacccaaagcttcattgctcttgcagctcttgttcccaaccttaaaaaggtacaat |
137 |
Q |
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|||||| |||||||| |||||||| |||||||| ||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25239347 |
ggatcacatcatggctgagagaaatcgaagagaaaaactcacccagaccttcattgctcttgcagctcttgttcctaaccttaaaaaggtacaat |
25239441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 25064557 - 25064464
Alignment:
| Q |
44 |
gatcatatcatggcagagagaaagcgaagagagaaactcacccaaagcttcattgctcttgcagctcttgttcccaaccttaaaaaggtacaat |
137 |
Q |
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||||| |||||||| |||||||| ||||||||||||||||| || | ||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
25064557 |
gatcacatcatggctgagagaaatcgaagagagaaactcactcagaccttcattgctcttgcagctcttgttcctaaccttaagaaggtacaat |
25064464 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 5205 - 5114
Alignment:
| Q |
44 |
gatcatatcatggcagagagaaagcgaagagagaaactcacccaaagcttcattgctcttgcagctcttgttcccaaccttaaaaaggtaca |
135 |
Q |
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|||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| | ||||||||||| |
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| T |
5205 |
gatcatatcatggctgagagaaagcgaagagagaaacttagccaaagcttcattgctcttgcagctcttgttcctaacttgaaaaaggtaca |
5114 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 4891960 - 4892035
Alignment:
| Q |
42 |
aggatcatatcatggcagagagaaagcgaagagagaaactcacccaaagcttcattgctcttgcagctcttgttcc |
117 |
Q |
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|||| |||||||| |||||||||||| ||||||||||||||| || |||| |||||||| || |||||| |||| |
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| T |
4891960 |
aggaccatatcatagcagagagaaagagaagagagaaactcagtcagtgcttgattgctctagctgctcttattcc |
4892035 |
T |
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