View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18936_low_48 (Length: 315)
Name: NF18936_low_48
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18936_low_48 |
 | |
|
| [»] chr1 (18 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] scaffold0690 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 18)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 9300074 - 9300388
Alignment:
| Q |
1 |
tcatcatgctctagtctatgacttcttcccaagtggtttgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttg |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9300074 |
tcatcgtgctctagtctatgacttcttcccaagtggttcgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttg |
9300173 |
T |
|
| Q |
101 |
caacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9300174 |
caacaaattgctctaggcatagccaatggaatagagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttga |
9300273 |
T |
|
| Q |
201 |
tcgatgacaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagtactatatctatgaccgcggccaaaggaacatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9300274 |
tcgatgacaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagtactatatctatgaccgcggccaaaggaacatt |
9300373 |
T |
|
| Q |
301 |
aggatacatggcacc |
315 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
9300374 |
aggatacatggcacc |
9300388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 9257636 - 9257322
Alignment:
| Q |
1 |
tcatcatgctctagtctatgacttcttcccaagtggtttgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttg |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
9257636 |
tcatcgtgctctagtctatgacttcttcccaaatggttcgttgcagaaattcatttctcctcctagcaacgaagatagtttccttggatgggacaagttg |
9257537 |
T |
|
| Q |
101 |
caacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9257536 |
caacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaagttgtgatcaaagaattcttcactttgacatcaatcctcataatgtcttga |
9257437 |
T |
|
| Q |
201 |
tcgatgacaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagtactatatctatgaccgcggccaaaggaacatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| | || |||||||||||||||||||| |||||||||||||||||||||||||| || || | ||||||||| |
|
|
| T |
9257436 |
tcgatgacaatttaaccccaaaaattacaaattttggtttggctaagatgtgctcaaaaaatcaaagtactatatctatgactgcagcgagaggaacatt |
9257337 |
T |
|
| Q |
301 |
aggatacatggcacc |
315 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
9257336 |
aggatacatggcacc |
9257322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 29 - 315
Target Start/End: Complemental strand, 9466833 - 9466547
Alignment:
| Q |
29 |
ccaagtggtttgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttgcaacaaattgctctaggcatagccaatg |
128 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| || | |||||||||| ||| ||||||||||| | | |||||||||||||||||||||||||||||| |
|
|
| T |
9466833 |
ccaagtggttctttgcagaaatttctttctccaccaaacaacaaagatgcttttcttggatgggacacgctgcaacaaattgctctaggcatagccaatg |
9466734 |
T |
|
| Q |
129 |
gaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttgatcgatgacaatttaaccccaaaaattac |
228 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||| || || |||||||| |
|
|
| T |
9466733 |
gaattgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataatgtcttgttagatgagaatttcactcccaaaattac |
9466634 |
T |
|
| Q |
229 |
agacttcggtttggctaagatgtgctcgaaaaatcaaagtactatatctatgaccgcggccaaaggaacattaggatacatggcacc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
9466633 |
agacttcggtttggctaagatgtgctcgaaaaatcgaagtacagtgtctatgaccgcagccaaaggaacgttaggctacatggcacc |
9466547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 7 - 315
Target Start/End: Complemental strand, 9242661 - 9242353
Alignment:
| Q |
7 |
tgctctagtctatgacttcttcccaagtggtttgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttgcaacaa |
106 |
Q |
| |
|
|||| ||||||||||||| ||||||| ||||| ||||||||||||||||||| | || | |||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
9242661 |
tgctttagtctatgactttttcccaaatggttcgttgcagaaattcatttcttccccaaacaacaaagatgatttccttggatgggataagttgcaaaaa |
9242562 |
T |
|
| Q |
107 |
attgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttgatcgatg |
206 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||| |||||| | |||| |
|
|
| T |
9242561 |
attgctctaggtatagccaatggcattgagtatctccaccaaggttgtgatcaaagaattctacactttgacatcaatcctaataatgtcttgttagatg |
9242462 |
T |
|
| Q |
207 |
acaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagtactatatctatgaccgcggccaaaggaacattaggata |
306 |
Q |
| |
|
||||||| | || |||||||||| || |||||||| |||||||| |||||||||||||||| | |||| ||||| ||||| || |||||| |||| || |
|
|
| T |
9242461 |
acaatttcattccccaaattacagattttggtttggccaagatgtgttcgaaaaatcaaagtattgtatccatgactgcggctaagggaacagtaggcta |
9242362 |
T |
|
| Q |
307 |
catggcacc |
315 |
Q |
| |
|
||||||||| |
|
|
| T |
9242361 |
catggcacc |
9242353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 7 - 315
Target Start/End: Original strand, 9364383 - 9364691
Alignment:
| Q |
7 |
tgctctagtctatgacttcttcccaagtggtttgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttgcaacaa |
106 |
Q |
| |
|
|||| ||||||||||||| || ||| ||||| ||||||||||||||||||||| | | || ||||||| ||||||||||||||||||||||||| || |
|
|
| T |
9364383 |
tgctttagtctatgactttttttcaaatggttcgttgcagaaattcatttctcccgcgaacagcaaagatgatttccttggatgggataagttgcaaaaa |
9364482 |
T |
|
| Q |
107 |
attgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttgatcgatg |
206 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| | |||| |
|
|
| T |
9364483 |
attgctctaggcatagcaaatggtattgagtatctccaccaaggttgtgatcaaagaattctacactttgacatcaatcctcataatgtcttgttagatg |
9364582 |
T |
|
| Q |
207 |
acaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagtactatatctatgaccgcggccaaaggaacattaggata |
306 |
Q |
| |
|
||||||| || || ||||||||||| || |||||||| ||||| || || ||||||||||||| |||| ||||| || || || ||||||||||| || |
|
|
| T |
9364583 |
acaatttcactcccaaaattacagattttggtttggccaagatatgttcaaaaaatcaaagtatcgtatccatgactgcagctaagggaacattaggcta |
9364682 |
T |
|
| Q |
307 |
catggcacc |
315 |
Q |
| |
|
||||||||| |
|
|
| T |
9364683 |
catggcacc |
9364691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 7 - 315
Target Start/End: Original strand, 9337524 - 9337832
Alignment:
| Q |
7 |
tgctctagtctatgacttcttcccaagtggtttgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttgcaacaa |
106 |
Q |
| |
|
|||| ||||||||||||| || ||| ||||| ||||||||||||||||||||| | | || ||||||| ||||||||||||||||||||||||| || |
|
|
| T |
9337524 |
tgctttagtctatgactttttttcaaatggttcgttgcagaaattcatttctcccgcgaacagcaaagatgatttccttggatgggataagttgcaaaaa |
9337623 |
T |
|
| Q |
107 |
attgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttgatcgatg |
206 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| | |||| |
|
|
| T |
9337624 |
attgctctaggcatagcaaatggtattgagtatctccaccaaggttgtgatcaaagaattctacactttgacatcaatcctcataatgtcttgttagatg |
9337723 |
T |
|
| Q |
207 |
acaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagtactatatctatgaccgcggccaaaggaacattaggata |
306 |
Q |
| |
|
||||||| || || ||||||||||| || |||||||| ||||| || || |||||||||||| |||| ||||| || || || ||||||||||| || |
|
|
| T |
9337724 |
acaatttcactcccaaaattacagattttggtttggccaagatatgttcaaaaaatcaaagtgtcgtatccatgactgcagctaagggaacattaggcta |
9337823 |
T |
|
| Q |
307 |
catggcacc |
315 |
Q |
| |
|
||||||||| |
|
|
| T |
9337824 |
catggcacc |
9337832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 7 - 315
Target Start/End: Original strand, 8926937 - 8927245
Alignment:
| Q |
7 |
tgctctagtctatgacttcttcccaagtggtttgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttgcaacaa |
106 |
Q |
| |
|
|||||| || |||||||| ||||| | ||||| |||||| || ||||||||| | || |||||| ||| ||||||||| ||||| ||||||||| |
|
|
| T |
8926937 |
tgctctggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacaacaaggatgttttccttggttgggacttattgcaacaa |
8927036 |
T |
|
| Q |
107 |
attgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttgatcgatg |
206 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |||||||| || || |||||| | |||| |
|
|
| T |
8927037 |
attgctctaggcattgccaatgggattgagtatcttcaccaaggttgtgatcatagaattcttcactttgatatcaatccccacaatgtcttgttagatg |
8927136 |
T |
|
| Q |
207 |
acaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagtactatatctatgaccgcggccaaaggaacattaggata |
306 |
Q |
| |
|
||||||| | |||||||| | ||||||||||| || ||| ||||||| |||||||| || ||| |||| ||||| || |||| ||||||||||| || |
|
|
| T |
8927137 |
acaatttcattccaaaaatatcggacttcggtttagcgaagctgtgctctaaaaatcatagcactgtatcgatgactgcagccaggggaacattaggtta |
8927236 |
T |
|
| Q |
307 |
catggcacc |
315 |
Q |
| |
|
||||||||| |
|
|
| T |
8927237 |
catggcacc |
8927245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 8962300 - 8962598
Alignment:
| Q |
17 |
tatgacttcttcccaagtggtttgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttgcaacaaattgctctag |
116 |
Q |
| |
|
|||||||| ||||| | ||||| |||||| || ||||||||| | ||| |||||| ||| ||||||||| ||||| |||||||| |||||||||| |
|
|
| T |
8962300 |
tatgactttttccctaatggttcgttgcaaaatttcatttcttcacctgacaacaaggatgttttccttggttgggacttattgcaacagattgctctag |
8962399 |
T |
|
| Q |
117 |
gcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttgatcgatgacaatttaac |
216 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| || |||||||||||||||||||| ||||| |||||||| || || ||||| | ||||||||||| || |
|
|
| T |
8962400 |
gcattgccaatggaattgagtatcttcaccagggctgtgatcaaagaattcttcattttgatatcaatccgcacaatatcttgttagatgacaattttac |
8962499 |
T |
|
| Q |
217 |
cccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagtactatatctatgaccgcggccaaaggaacattaggatacatggcacc |
315 |
Q |
| |
|
|||||||| ||||||| ||||| || ||| ||||||| |||||||||| || | |||| ||||| ||||| | ||||||||||||||||||||||| |
|
|
| T |
8962500 |
tccaaaaatatcagactttggtttagccaagttgtgctccaaaaatcaaactattgtatcgatgactgcggctaggggaacattaggatacatggcacc |
8962598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 8939373 - 8939671
Alignment:
| Q |
17 |
tatgacttcttcccaagtggtttgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttgcaacaaattgctctag |
116 |
Q |
| |
|
|||||||| ||||||| ||||| ||||| || ||||||||| | ||| |||||| ||| ||||||||| ||||| ||||||||||||||||| | |
|
|
| T |
8939373 |
tatgactttttcccaaatggttcattgcaaaatttcatttcttcacctgacaacaaggatgttttccttggttgggacttattgcaacaaattgctcttg |
8939472 |
T |
|
| Q |
117 |
gcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttgatcgatgacaatttaac |
216 |
Q |
| |
|
|||| |||||||| || ||||||||||||||||| |||||||| |||||||||||||| || |||||||| ||||| || || | ||||||||||| |
|
|
| T |
8939473 |
gcattgccaatgggattgagtatcttcaccaaggctgtgatcatagaattcttcacttcgatatcaatccacataatgtattattagatgacaatttcgt |
8939572 |
T |
|
| Q |
217 |
cccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagtactatatctatgaccgcggccaaaggaacattaggatacatggcacc |
315 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||||| |||||||||||||| |||| |||||||| |||| ||||| ||||| ||||||||||| |
|
|
| T |
8939573 |
tccaaaaatatcagacttcggtttagctaagctgtgctccaaaaatcaaagtacagtatcaatgaccgcagccaggggaactttagggtacatggcacc |
8939671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 86 - 267
Target Start/End: Complemental strand, 9420728 - 9420547
Alignment:
| Q |
86 |
ggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatc |
185 |
Q |
| |
|
|||||||| ||| | |||||||||||||| ||||||||||| || || |||||||||||| |||||||||| |||||||||||| || || |||| |
|
|
| T |
9420728 |
ggatgggagaagctacaacaaattgctcttggcatagccaaaggtattgagtatcttcacatgagttgtgatcagcaaattcttcacttcgatattaatc |
9420629 |
T |
|
| Q |
186 |
ctcataacgtcttgatcgatgacaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaag |
267 |
Q |
| |
|
| ||||||| || | |||||||| || ||||||||||| || || |||||||| || ||||||| ||||||||||| |
|
|
| T |
9420628 |
cctataacgtgttattagatgacaagtttgttccaaaaattactgattttggtttggcgaaattgtgctctaaaaatcaaag |
9420547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 195
Target Start/End: Complemental strand, 9437811 - 9437702
Alignment:
| Q |
86 |
ggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatc |
185 |
Q |
| |
|
|||||||| ||| | |||||||||||||| ||||||||||| || || |||||||||||| |||||||||| |||||||||||| || || |||| |
|
|
| T |
9437811 |
ggatgggagaagctacaacaaattgctcttggcatagccaaaggtattgagtatcttcacatgagttgtgatcagcaaattcttcacttcgatattaatc |
9437712 |
T |
|
| Q |
186 |
ctcataacgt |
195 |
Q |
| |
|
| |||||||| |
|
|
| T |
9437711 |
cccataacgt |
9437702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 183
Target Start/End: Original strand, 10992814 - 10992917
Alignment:
| Q |
80 |
ttccttggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgaca |
179 |
Q |
| |
|
|||||||| ||| | |||||||| |||||||| |||| ||||| || ||| | ||||||||||| ||||||||||||||| | || ||||| ||||| | |
|
|
| T |
10992814 |
ttccttggttggaaaaagttgcatgaaattgctttaggtatagctaaaggagttgagtatcttcatcaaggttgtgatcaacgcatccttcattttgata |
10992913 |
T |
|
| Q |
180 |
tcaa |
183 |
Q |
| |
|
|||| |
|
|
| T |
10992914 |
tcaa |
10992917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 11026270 - 11026350
Alignment:
| Q |
80 |
ttccttggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaa |
160 |
Q |
| |
|
|||||||| ||| | |||||||| |||||||| |||| ||||| || ||||| || |||||||| ||||||||||||||| |
|
|
| T |
11026270 |
ttccttggctggaaaaagttgcacgaaattgctttaggaatagctaaaggaattgaatatcttcatcaaggttgtgatcaa |
11026350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 11040973 - 11041053
Alignment:
| Q |
80 |
ttccttggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaa |
160 |
Q |
| |
|
|||||||| ||| | |||||||| |||||||| |||| ||||| || ||||| || |||||||| ||||||||||||||| |
|
|
| T |
11040973 |
ttccttggctggaaaaagttgcacgaaattgctttaggaatagctaaaggaattgaatatcttcatcaaggttgtgatcaa |
11041053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 8979213 - 8979098
Alignment:
| Q |
116 |
ggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttgatcgatgacaatttaa |
215 |
Q |
| |
|
|||||||||| ||||| ||||||||||| || |||||| ||| ||| ||||| ||||||||||| ||||| || || ||| ||||||||| |||| |
|
|
| T |
8979213 |
ggcatagccagaggaattgagtatcttcatcagggttgtagtcattcaatccttcattttgacatcaaccctcacaatgttttgctcgatgacacattaa |
8979114 |
T |
|
| Q |
216 |
ccccaaaaattacaga |
231 |
Q |
| |
|
| ||||||||| |||| |
|
|
| T |
8979113 |
ctccaaaaatttcaga |
8979098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 192
Target Start/End: Original strand, 9495346 - 9495449
Alignment:
| Q |
89 |
tgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctc |
188 |
Q |
| |
|
||||| ||||| ||| ||||||| || || ||||| || ||||| ||||||||||| ||||| ||||| || || || ||||||||||| || || |||| |
|
|
| T |
9495346 |
tgggagaagttacaagaaattgcgcttggaatagcgaaaggaattgagtatcttcatcaaggatgtgaccagaggatacttcactttgatataaaacctc |
9495445 |
T |
|
| Q |
189 |
ataa |
192 |
Q |
| |
|
|||| |
|
|
| T |
9495446 |
ataa |
9495449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 315
Target Start/End: Original strand, 9377846 - 9378012
Alignment:
| Q |
149 |
ggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttgatcgatgacaatttaaccccaaaaattacagacttcggtttggctaaga |
248 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||||||| || || || || || ||||| ||||| | || |||||||| ||||| || | ||||| |
|
|
| T |
9377846 |
ggttgtgatcatagaatacttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcctaaaattactgactttggacttgctaaac |
9377945 |
T |
|
| Q |
249 |
tgtgctcgaaaaatcaaagtactatatctatgaccgcggccaaaggaacattaggatacatggcacc |
315 |
Q |
| |
|
|||| | |||||||||||||| | ||||| ||||| || | ||||||||| || ||||| ||||| |
|
|
| T |
9377946 |
tgtgtcccaaaaatcaaagtacggtgtctataaccgcagctagaggaacattgggctacattgcacc |
9378012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 10930610 - 10930686
Alignment:
| Q |
80 |
ttccttggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtga |
156 |
Q |
| |
|
|||||||| ||| | |||||||| |||||||| |||| ||||| || ||| | ||||||||||| ||||||||||| |
|
|
| T |
10930610 |
ttccttggttggaaaaagttgcatgaaattgctttaggtatagctaaaggagttgagtatcttcatcaaggttgtga |
10930686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 69 - 315
Target Start/End: Original strand, 9171551 - 9171797
Alignment:
| Q |
69 |
acaaagatagtttccttggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattct |
168 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
9171551 |
acaaagatagtttccttagatgggacaagttgcaacaaattgctctaggaatagccaatggaattgagtatctgcaccaaggttgtgatcaaagaattct |
9171650 |
T |
|
| Q |
169 |
tcactttgacatcaatcctcataacgtcttgatcgatgacaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagt |
268 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
9171651 |
tcactttgacattaatcctcataacgtcttactagatgacaatttcaccccaaaaattacagacttcggtttggctaagttgtgctcaaaaaatcaaagt |
9171750 |
T |
|
| Q |
269 |
actatatctatgaccgcggccaaaggaacattaggatacatggcacc |
315 |
Q |
| |
|
|||||||| ||||| || |||| |||||||||||||||||||||||| |
|
|
| T |
9171751 |
actatatcaatgactgcagccagaggaacattaggatacatggcacc |
9171797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 9171477 - 9171533
Alignment:
| Q |
1 |
tcatcatgctctagtctatgacttcttcccaagtggtttgttgcagaaattcatttc |
57 |
Q |
| |
|
||||| ||||||||||||||| || ||||||| ||||| ||||||||||||||||| |
|
|
| T |
9171477 |
tcatcgtgctctagtctatgattttttcccaaatggttctttgcagaaattcatttc |
9171533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 15910520 - 15910206
Alignment:
| Q |
1 |
tcatcatgctctagtctatgacttcttcccaagtggtttgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttg |
100 |
Q |
| |
|
||||| |||| |||| |||||||| || |||| ||||| ||| || |||||||| |||| || | |||||||||| |||||||||||||||||| ||| |
|
|
| T |
15910520 |
tcatcgtgctttagtttatgacttttttccaaatggttcgttacaaaaattcatatctcacccgaacaacaaagatgatttccttggatgggataaattg |
15910421 |
T |
|
| Q |
101 |
caacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttga |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| |
|
|
| T |
15910420 |
caacaaattgctctaggcatagctaatggcattgagtatctccaccaaggttgtgatcaaagaattttacactttgacatcaatcctcataatatcttgc |
15910321 |
T |
|
| Q |
201 |
tcgatgacaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagtactatatctatgaccgcggccaaaggaacatt |
300 |
Q |
| |
|
| ||||||||||| || || ||||| ||||| || ||||||||||||||||| |||||||||||||||| | |||| ||||| | || || |||||||| |
|
|
| T |
15910320 |
tagatgacaatttcactcccaaaatcacagattttggtttggctaagatgtgttcgaaaaatcaaagtaatgtatccatgactgtagctaagggaacatt |
15910221 |
T |
|
| Q |
301 |
aggatacatggcacc |
315 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
15910220 |
aggctacatggcacc |
15910206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 7 - 315
Target Start/End: Original strand, 1592 - 1900
Alignment:
| Q |
7 |
tgctctagtctatgacttcttcccaagtggtttgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttgcaacaa |
106 |
Q |
| |
|
|||| |||| |||||||| || |||| ||||| ||| ||||||||||| |||| | | |||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
1592 |
tgctttagtttatgacttttttccaaatggttcgttacagaaattcatatctcacctgaacaacaaagatgatttccttggatgggataaattgcaacaa |
1691 |
T |
|
| Q |
107 |
attgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttgatcgatg |
206 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| | |||| |
|
|
| T |
1692 |
attgctctaggcatagctaatggcattgagtatctccaccaaggttgtgatcaaagaattttacactttgacatcaatcctcataatatcttgctagatg |
1791 |
T |
|
| Q |
207 |
acaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagtactatatctatgaccgcggccaaaggaacattaggata |
306 |
Q |
| |
|
||||||| || || ||||| ||||| || ||||||||||||||||| |||||||||||||||| | |||| ||||| | || || ||||||||||| || |
|
|
| T |
1792 |
acaatttcactcccaaaatcacagattttggtttggctaagatgtgttcgaaaaatcaaagtaatgtatccatgactacagctaagggaacattaggcta |
1891 |
T |
|
| Q |
307 |
catggcacc |
315 |
Q |
| |
|
||||||||| |
|
|
| T |
1892 |
catggcacc |
1900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 243
Target Start/End: Original strand, 27696131 - 27696255
Alignment:
| Q |
119 |
atagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttgatcgatgacaatttaaccc |
218 |
Q |
| |
|
||||| || ||||| ||||||||||| |||||||||||| || ||||||| || ||||| ||||| ||||||||||| ||| | || |||||||| || | |
|
|
| T |
27696131 |
atagcgaagggaattgagtatcttcatcaaggttgtgataaacgaattctccattttgatatcaaacctcataacgtattgctagacgacaatttcacac |
27696230 |
T |
|
| Q |
219 |
caaaaattacagacttcggtttggc |
243 |
Q |
| |
|
| |||||| | || || |||||||| |
|
|
| T |
27696231 |
ccaaaatttctgattttggtttggc |
27696255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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