View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18936_low_49 (Length: 313)

Name: NF18936_low_49
Description: NF18936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18936_low_49
NF18936_low_49
[»] chr7 (18 HSPs)
chr7 (15-306)||(18415442-18415733)
chr7 (113-303)||(11642418-11642608)
chr7 (113-299)||(45286365-45286551)
chr7 (113-303)||(9141285-9141475)
chr7 (113-303)||(16375732-16375922)
chr7 (71-249)||(45418620-45418798)
chr7 (138-249)||(45823699-45823810)
chr7 (146-183)||(11003042-11003079)
chr7 (146-183)||(22368179-22368216)
chr7 (124-183)||(15494666-15494725)
chr7 (113-196)||(16011072-16011155)
chr7 (146-181)||(34577228-34577263)
chr7 (150-183)||(20912762-20912795)
chr7 (113-196)||(14591481-14591564)
chr7 (143-249)||(39665887-39665993)
chr7 (143-300)||(30068151-30068308)
chr7 (143-300)||(45137823-45137980)
chr7 (111-196)||(46539018-46539103)
[»] chr5 (9 HSPs)
chr5 (15-306)||(21000802-21001093)
chr5 (111-303)||(19123103-19123295)
chr5 (113-303)||(14164501-14164691)
chr5 (113-303)||(31486283-31486473)
chr5 (75-174)||(7782094-7782193)
chr5 (138-196)||(14988259-14988317)
chr5 (146-183)||(37714222-37714259)
chr5 (138-243)||(16678879-16678984)
chr5 (128-240)||(38095629-38095741)
[»] chr3 (17 HSPs)
chr3 (15-306)||(21799687-21799980)
chr3 (143-253)||(2470130-2470240)
chr3 (104-303)||(53047207-53047406)
chr3 (124-301)||(2702076-2702256)
chr3 (189-303)||(17757681-17757795)
chr3 (189-303)||(19059001-19059115)
chr3 (65-183)||(26701221-26701339)
chr3 (113-174)||(14604243-14604304)
chr3 (113-196)||(29692913-29692996)
chr3 (113-196)||(29693327-29693410)
chr3 (146-183)||(46590848-46590885)
chr3 (146-181)||(20370839-20370874)
chr3 (143-249)||(7548894-7549000)
chr3 (40-198)||(29679391-29679549)
chr3 (128-237)||(18256115-18256224)
chr3 (143-300)||(18986303-18986460)
chr3 (143-243)||(52381895-52381995)
[»] chr4 (13 HSPs)
chr4 (56-306)||(50232059-50232310)
chr4 (26-253)||(56475954-56476181)
chr4 (26-303)||(2479327-2479604)
chr4 (71-303)||(29968131-29968358)
chr4 (71-249)||(18000622-18000800)
chr4 (113-303)||(41851163-41851353)
chr4 (113-232)||(49200301-49200420)
chr4 (111-196)||(54568730-54568815)
chr4 (124-183)||(23143701-23143760)
chr4 (143-249)||(3996132-3996238)
chr4 (138-196)||(50938638-50938696)
chr4 (197-249)||(10466710-10466762)
chr4 (146-182)||(27707834-27707870)
[»] scaffold0013 (2 HSPs)
scaffold0013 (71-303)||(104539-104771)
scaffold0013 (127-303)||(127244-127420)
[»] chr8 (15 HSPs)
chr8 (124-303)||(604160-604339)
chr8 (71-303)||(1199410-1199642)
chr8 (124-299)||(44434247-44434421)
chr8 (124-183)||(31378851-31378910)
chr8 (124-249)||(44429490-44429615)
chr8 (124-243)||(37589448-37589567)
chr8 (124-174)||(44430683-44430733)
chr8 (143-196)||(16468825-16468878)
chr8 (125-240)||(4969619-4969734)
chr8 (125-240)||(9885717-9885832)
chr8 (139-182)||(23798068-23798111)
chr8 (154-249)||(30437191-30437286)
chr8 (152-183)||(43382534-43382565)
chr8 (124-174)||(25921053-25921103)
chr8 (143-204)||(6644390-6644451)
[»] chr1 (8 HSPs)
chr1 (71-303)||(23480950-23481182)
chr1 (26-253)||(23263760-23263986)
chr1 (113-303)||(38685351-38685541)
chr1 (92-249)||(5429198-5429355)
chr1 (65-196)||(17287710-17287841)
chr1 (75-174)||(11930897-11930996)
chr1 (143-249)||(23396304-23396410)
chr1 (128-237)||(37891656-37891765)
[»] chr6 (8 HSPs)
chr6 (124-249)||(17905826-17905951)
chr6 (113-174)||(8560343-8560404)
chr6 (113-196)||(34417101-34417184)
chr6 (146-183)||(4096002-4096039)
chr6 (146-183)||(4439977-4440014)
chr6 (189-303)||(1394039-1394153)
chr6 (146-180)||(2736663-2736697)
chr6 (138-196)||(8498043-8498101)
[»] scaffold1155 (1 HSPs)
scaffold1155 (124-303)||(776-956)
[»] scaffold0345 (1 HSPs)
scaffold0345 (124-303)||(9261-9441)
[»] scaffold0105 (1 HSPs)
scaffold0105 (124-303)||(29539-29719)
[»] scaffold0059 (1 HSPs)
scaffold0059 (127-303)||(71294-71470)
[»] chr2 (4 HSPs)
chr2 (71-249)||(20640150-20640328)
chr2 (65-196)||(9361776-9361907)
chr2 (143-194)||(28495779-28495830)
chr2 (143-249)||(13856061-13856167)
[»] scaffold0032 (1 HSPs)
scaffold0032 (113-174)||(20796-20857)
[»] scaffold0416 (1 HSPs)
scaffold0416 (143-204)||(5352-5413)
[»] scaffold0001 (1 HSPs)
scaffold0001 (152-196)||(414185-414229)


Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 15 - 306
Target Start/End: Complemental strand, 18415733 - 18415442
Alignment:
Q  15 tcttagagagcaaggtaatttccagaagtaatatgggtgtcagagtctttatacctaggctatctctatcaccctccgatgtgagaatcccttttgaatt 114  Q
    |||||||| |||||||||||||  |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18415733 tcttagagggcaaggtaatttctggaagtaatgtgggtgacagagtctttatacctaggctatctctatcaccctccgatgtgagaatcccttttaaatt 18415634  T
Q  115 tcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcct 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18415633 tcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccggcgcct 18415534  T
Q  215 gttttttctcacggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatggtgatga 306  Q
    ||||||||||||||||||||||||||||||||||||||| ||  ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18415533 gttttttctcacggacaattgtatgttgctgtttcgagagttacatctagaggaggtttgaagatattgatcaccgatgaagatggtgatga 18415442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 113 - 303
Target Start/End: Complemental strand, 11642608 - 11642418
Alignment:
Q  113 tttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgc 212  Q
    |||||| ||| ||||||||||||| |||||||||||||||||||||| ||||| | |||||| || || ||  || ||||||| |||||||| || || |    
T  11642608 tttcaacgaagacaatttcctttgactgtatcatttgcaatgacaattaacaaaattcaagggcagtcgcttaaacatgttggtgtatatctaccaacac 11642509  T
Q  213 ctgttttttctcacggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatggtga 303  Q
    |||| |||||||||||||| ||||||||||||||||| ||| ||  ||| |||  |||  | || ||||||||||| |||||| |||||||    
T  11642508 ctgtattttctcacggacagttgtatgttgctgtttcaagagttacatccagagaaggactaaatatattgatcactgatgaaaatggtga 11642418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 113 - 299
Target Start/End: Original strand, 45286365 - 45286551
Alignment:
Q  113 tttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgc 212  Q
    |||||| ||| ||||||||||||| |||||||||||||||||||||| ||||| ||| || | || || ||  || ||||||| |||||||| || || |    
T  45286365 tttcaacgaagacaatttcctttgactgtatcatttgcaatgacaattaacaaaagttaaaggcagtcgcttaaacatgttggtgtatatctaccaacac 45286464  T
Q  213 ctgttttttctcacggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatg 299  Q
    |||| |||||||||||||| |||||||||| |||||| ||| ||  ||| |||  |||  | |||||||||||||| ||||||||||    
T  45286465 ctgtattttctcacggacagttgtatgttgttgtttcaagagttacatccagagaaggactaaagatattgatcactgatgaagatg 45286551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 113 - 303
Target Start/End: Complemental strand, 9141475 - 9141285
Alignment:
Q  113 tttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgc 212  Q
    |||||| ||| ||||||||||||| |||||||||||||||||| ||| ||||| |||||||| || |||||  |  ||||||| |||||||| || || |    
T  9141475 tttcaacgaagacaatttcctttgactgtatcatttgcaatgataattaacaaaagtcaagggcagtcacttaagcatgttggtgtatatctaccaacac 9141376  T
Q  213 ctgttttttctcacggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatggtga 303  Q
    |||| |||||||| ||||| || |||||||||||||| | | ||  |||||||  |||  | |||||||||||||  ||||| ||||||||    
T  9141375 ctgtattttctcatggacatttctatgttgctgtttcaaaagttacatctagagaaggactaaagatattgatcattgatgatgatggtga 9141285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 113 - 303
Target Start/End: Complemental strand, 16375922 - 16375732
Alignment:
Q  113 tttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgc 212  Q
    |||||| ||| ||||||||||||| || ||||||||||||||||||| || || |||||||  || || ||  || ||||||| |||||||| || || |    
T  16375922 tttcaacgaagacaatttcctttgactttatcatttgcaatgacaattaaaaaaagtcaagcgcagtcgcttaaacatgttggtgtatatctaccaacac 16375823  T
Q  213 ctgttttttctcacggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatggtga 303  Q
    |||| |||||||| ||||||||||||| || |||||| ||| ||  ||| |||  |||  | |||||||||||||| ||||||||||||||    
T  16375822 ctgtattttctcaaggacaattgtatgatgttgtttcaagagttacatccagagaaggactaaagatattgatcactgatgaagatggtga 16375732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 249
Target Start/End: Complemental strand, 45418798 - 45418620
Alignment:
Q  71 aggctatctctatcaccctccgatgtgagaatcccttttgaatttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtc 170  Q
    ||||||||| |||| || || ||||| || || || ||| | |||||| ||| ||||||| ||||| |||||||||||||||||||||| ||||| ||||    
T  45418798 aggctatctatatcgccttcagatgtcaggattccctttaagtttcaacgaagacaatttgctttgactgtatcatttgcaatgacaattaacaaaagtc 45418699  T
Q  171 aaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcacggacaattgtatgttgctgtttc 249  Q
    |||  || || ||  || ||| ||  |||||||| || || ||||| |||||||||||||| |||||||||||||||||    
T  45418698 aagtccagtcgcttaaacatgatgatgtatatctaccaacacctgtattttctcacggacagttgtatgttgctgtttc 45418620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 138 - 249
Target Start/End: Original strand, 45823699 - 45823810
Alignment:
Q  138 ctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcacggacaattgta 237  Q
    |||| |||||||||||||| |||||||| |||||||| ||||||||   | ||||||| ||||| || || |||||||| |||||||| ||||| || ||    
T  45823699 ctgtgtcatttgcaatgactatcaacaaaagtcaagggcaatcactcggacatgttggtgtatacctaccaacgcctgtattttctcatggacagttata 45823798  T
Q  238 tgttgctgtttc 249  Q
    ||| ||||||||    
T  45823799 tgtagctgtttc 45823810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 11003079 - 11003042
Alignment:
Q  146 tttgcaatgacaatcaacaagagtcaaggacaatcact 183  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11003079 tttgcaatgacaatcaacaagagtcaaggacaatcact 11003042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 22368179 - 22368216
Alignment:
Q  146 tttgcaatgacaatcaacaagagtcaaggacaatcact 183  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22368179 tttgcaatgacaatcaacaagagtcaaggacaatcact 22368216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 183
Target Start/End: Complemental strand, 15494725 - 15494666
Alignment:
Q  124 acaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcact 183  Q
    ||||||||||||| ||||||  |||||||||||||||||||| ||  |||||||||||||    
T  15494725 acaatttcctttgtctgtatgttttgcaatgacaatcaacaaaagctaaggacaatcact 15494666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 196
Target Start/End: Original strand, 16011072 - 16011155
Alignment:
Q  113 tttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttgga 196  Q
    |||||||||| ||||| |||  |  |||| |||||||| |||||||||||||||||||| |||||||||||  | |||||||||    
T  16011072 tttcaaagaagacaatatccaatatctgtttcatttgccatgacaatcaacaagagtcagggacaatcacttaagaatgttgga 16011155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 181
Target Start/End: Original strand, 34577228 - 34577263
Alignment:
Q  146 tttgcaatgacaatcaacaagagtcaaggacaatca 181  Q
    ||||||||||||||||||||||||||||||||||||    
T  34577228 tttgcaatgacaatcaacaagagtcaaggacaatca 34577263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 183
Target Start/End: Complemental strand, 20912795 - 20912762
Alignment:
Q  150 caatgacaatcaacaagagtcaaggacaatcact 183  Q
    ||||||||||||||||||||||||||||||||||    
T  20912795 caatgacaatcaacaagagtcaaggacaatcact 20912762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 196
Target Start/End: Original strand, 14591481 - 14591564
Alignment:
Q  113 tttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttgga 196  Q
    |||||||||| ||||| |||  |  |||| |||||||| |||||||||||||||||||| || ||||||||  | |||||||||    
T  14591481 tttcaaagaagacaatatccaatatctgtttcatttgccatgacaatcaacaagagtcaggggcaatcacttaagaatgttgga 14591564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 249
Target Start/End: Complemental strand, 39665993 - 39665887
Alignment:
Q  143 tcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcacggacaattgtatgttg 242  Q
    |||||| | ||||| ||||| ||||||||||||||||| ||  ||||||||||| ||||||| || |  ||  | ||||| |||||||| || |||||||    
T  39665993 tcatttacgatgactatcaataagagtcaaggacaatctcttaaaaatgttggaatatatcttccaaaacccatattttcacacggacagttatatgttg 39665894  T
Q  243 ctgtttc 249  Q
    || ||||    
T  39665893 ctctttc 39665887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 300
Target Start/End: Original strand, 30068151 - 30068308
Alignment:
Q  143 tcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcacggacaattgtatgttg 242  Q
    |||||||||||||| |||||||| |||||||| |||||| |  || | ||||||||||| || ||    || |||||||| ||||||||| | |||||||    
T  30068151 tcatttgcaatgacgatcaacaaaagtcaagggcaatcattgaaagaagttggagtataccttcctcaaccggttttttcccacggacaactatatgttg 30068250  T
Q  243 ctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatgg 300  Q
    | || || ||| ||  ||| ||||  || |||||||||||   ||| |||||||||||    
T  30068251 cggtgtcaagagttacatcaagaaacggattgaagatattatgcacggatgaagatgg 30068308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 300
Target Start/End: Original strand, 45137823 - 45137980
Alignment:
Q  143 tcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcacggacaattgtatgttg 242  Q
    |||||||||||||| |||||||| |||||||| |||||| |  || | ||||||||||| || ||    || |||||||| ||||||||| | |||||||    
T  45137823 tcatttgcaatgacgatcaacaaaagtcaagggcaatcattgaaagaagttggagtataccttcctcaaccggttttttcccacggacaactatatgttg 45137922  T
Q  243 ctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatgg 300  Q
    | || || ||| ||  ||| ||||  || |||||||||||   ||| |||||||||||    
T  45137923 cggtgtcaagagttacatcaagaaacggattgaagatattatgcacggatgaagatgg 45137980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 196
Target Start/End: Original strand, 46539018 - 46539103
Alignment:
Q  111 aatttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttgga 196  Q
    ||||||| |||| |||||||||  |  |||| |||||||  |||||||||||||||||||||||  ||||| |  |||||||||||    
T  46539018 aatttcagagaagacaatttccaatatctgtttcatttgtcatgacaatcaacaagagtcaagggaaatcatttaaaaatgttgga 46539103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 15 - 306
Target Start/End: Complemental strand, 21001093 - 21000802
Alignment:
Q  15 tcttagagagcaaggtaatttccagaagtaatatgggtgtcagagtctttatacctaggctatctctatcaccctccgatgtgagaatcccttttgaatt 114  Q
    ||||||||  ||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21001093 tcttagaggtcaaggtaatttccggaagtaatgtgggtgacagagtctttatacctaggctatctctatcaccctccgatgtgagaatcccttttaaatt 21000994  T
Q  115 tcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcct 214  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21000993 tcaaagaaaacaatttcctttgcctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccggcgcct 21000894  T
Q  215 gttttttctcacggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatggtgatga 306  Q
    ||||||||||||||||||||||||||||||||||||||| ||  ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21000893 gttttttctcacggacaattgtatgttgctgtttcgagagttacatctagaggaggtttgaagatattgatcaccgatgaagatggtgatga 21000802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 111 - 303
Target Start/End: Original strand, 19123103 - 19123295
Alignment:
Q  111 aatttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgac 210  Q
    |||||||| ||| ||||||||||||| |||||||||||||||||||| | ||||| |||||||| || || ||  || ||||||| |||||||| || ||    
T  19123103 aatttcaacgaagacaatttcctttgactgtatcatttgcaatgacagttaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaac 19123202  T
Q  211 gcctgttttttctcacggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatggtga 303  Q
     ||||| |||||||||||||| ||||||||||||||||| ||| || |||| |||  |||  | |||||||||||||  ||||||||||||||    
T  19123203 acctgtattttctcacggacagttgtatgttgctgtttcaagagttatatccagagaaggactaaagatattgatcattgatgaagatggtga 19123295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 113 - 303
Target Start/End: Complemental strand, 14164691 - 14164501
Alignment:
Q  113 tttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgc 212  Q
    |||||| ||| |||||||||||||  ||||||||||||||||||||| ||||| ||||||||  | || ||  || ||||||  |||||||| || || |    
T  14164691 tttcaacgaagacaatttcctttgaatgtatcatttgcaatgacaattaacaaaagtcaagggtagtcgcttaaacatgttgttgtatatctaccaacac 14164592  T
Q  213 ctgttttttctcacggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatggtga 303  Q
    |||| |||||||||||||| ||||||||||||||||| | | ||  ||| |||  |||  | |||||||||||| | ||||||||||||||    
T  14164591 ctgtattttctcacggacagttgtatgttgctgtttcaaaagttacatccagagaaggactaaagatattgatcgctgatgaagatggtga 14164501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 303
Target Start/End: Complemental strand, 31486473 - 31486283
Alignment:
Q  113 tttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgc 212  Q
    |||||| ||| | ||||| ||||| |||||||||||| ||||||||| ||||| |||||||| || || ||  || ||||| | |||||||| || || |    
T  31486473 tttcaacgaagataattttctttgactgtatcatttgaaatgacaattaacaaaagtcaagggcagtcgcttaaacatgtttgtgtatatctaccaacac 31486374  T
Q  213 ctgttttttctcacggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatggtga 303  Q
    |||| ||||||| |||||| |||||||||||| |||| ||| ||  ||| |||  |||  | |||||||||||||| ||||||||||||||    
T  31486373 ctgtattttctcgcggacagttgtatgttgctttttcaagagttacatccagagaaggactaaagatattgatcactgatgaagatggtga 31486283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 7782094 - 7782193
Alignment:
Q  75 tatctctatcaccctccgatgtgagaatcccttttgaatttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaagg 174  Q
    |||||||||| || || ||||| || || || ||| | |||||| ||| |||||||||||||  ||||||||||||||||| ||| ||||| ||||||||    
T  7782094 tatctctatcgccttcagatgtcaggattccctttaagtttcaacgaagacaatttcctttgattgtatcatttgcaatgataattaacaaaagtcaagg 7782193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 14988259 - 14988317
Alignment:
Q  138 ctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttgga 196  Q
    |||| |||||||| ||||||||||||||||||||||  ||||||||  |||||||||||    
T  14988259 ctgtttcatttgccatgacaatcaacaagagtcaagagcaatcacttaaaaatgttgga 14988317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 37714259 - 37714222
Alignment:
Q  146 tttgcaatgacaatcaacaagagtcaaggacaatcact 183  Q
    |||||||||||||||||||||||||| |||||||||||    
T  37714259 tttgcaatgacaatcaacaagagtcatggacaatcact 37714222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 243
Target Start/End: Complemental strand, 16678984 - 16678879
Alignment:
Q  138 ctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcacggacaattgta 237  Q
    |||| |||||||||||||| || ||||||||||| || || ||  |  |||||||||| || ||||| ||| | ||||||||||  || |||||||||||    
T  16678984 ctgtctcatttgcaatgactattaacaagagtcagggtcagtctttgaaaaatgttggtgtctatctaccgtctcctgtttttttacatggacaattgta 16678885  T
Q  238 tgttgc 243  Q
     |||||    
T  16678884 cgttgc 16678879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 240
Target Start/End: Complemental strand, 38095741 - 38095629
Alignment:
Q  128 tttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcacg 227  Q
    ||||| ||| |||| |||||||||||||| || ||||||||||| || || ||  |  ||||| |||| || ||||| ||| | | ||||||||| || |    
T  38095741 tttccgttgtctgtctcatttgcaatgactattaacaagagtcagggtcagtctttgaaaaatattggtgtctatctaccgtctcttgttttttcacatg 38095642  T
Q  228 gacaattgtatgt 240  Q
    |||||||||||||    
T  38095641 gacaattgtatgt 38095629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 306
Target Start/End: Original strand, 21799687 - 21799980
Alignment:
Q  15 tcttagagagcaaggtaatttccagaagtaatatgggtgtcagagtctttatacctaggctatctctatcaccctccgatgtgagaatcccttttgaatt 114  Q
    |||||||| ||||||||||||||  ||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  21799687 tcttagagggcaaggtaatttccgaaagtaatgtgggtgacagagtctttatacctaggttatctctatcaccctccgatgtgagaatcccttttaaatt 21799786  T
Q  115 tcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcct 214  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  21799787 tcaaagaaaacaattttctttggctgtatgatttgcaatgacaatcaacaagagtcgaggacaatcactacaaaatgttggagtatatctcccggcgcct 21799886  T
Q  215 g--ttttttctcacggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatggtgatga 306  Q
    |  |||||||||||||||||||||||||||||||||||||| ||  |||||||  |||||||||||||||||||||||||||||||||||||||    
T  21799887 gttttttttctcacggacaattgtatgttgctgtttcgagagttacatctagagaaggtttgaagatattgatcaccgatgaagatggtgatga 21799980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 253
Target Start/End: Original strand, 2470130 - 2470240
Alignment:
Q  143 tcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcacggacaattgtatgttg 242  Q
    |||||||||||||| || || ||||||||| ||||||||||| |  |||||||||| |||||||| |  ||||||||||||||| |||||||||||||||    
T  2470130 tcatttgcaatgactattaagaagagtcaatgacaatcactaaagcatgttggagtgtatctcccaattcctgttttttctcacagacaattgtatgttg 2470229  T
Q  243 ctgtttcgaga 253  Q
    |||||||||||    
T  2470230 ctgtttcgaga 2470240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 303
Target Start/End: Complemental strand, 53047406 - 53047207
Alignment:
Q  104 ccttttgaatttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatc 203  Q
    |||||| | |||||| ||| ||||||||||| | ||||||||||||||| |||||| ||||| |||||||  || || ||  || ||||||| |||||||    
T  53047406 ccttttaagtttcaacgaagacaatttccttggactgtatcatttgcaacgacaattaacaaaagtcaagagcagtcgcttaaacatgttggtgtatatc 53047307  T
Q  204 tcccgacgcctgttttttctcacggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatggtga 303  Q
    | || ||   ||| ||||||||||||||  |||||||||||||||| ||| ||  ||| |||  |||  | || ||||||||||  ||||||||||||||    
T  53047306 taccaacaaatgtattttctcacggacagatgtatgttgctgtttcaagagttacatccagagaaggactaaatatattgatcagtgatgaagatggtga 53047207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 124 - 301
Target Start/End: Original strand, 2702076 - 2702256
Alignment:
Q  124 acaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactac---aaaatgttggagtatatctcccgacgcctgttttt 220  Q
    ||||||||||||| |||||||||||||||||||||| | ||| |||||||| || || ||     || ||||||  |||||||| || || ||||| |||    
T  2702076 acaatttcctttgactgtatcatttgcaatgacaattatcaaaagtcaagggcagtcgcttattaaacatgttgatgtatatctaccaacacctgtattt 2702175  T
Q  221 tctcacggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatggt 301  Q
    ||||||||||| ||||||||||||||||| ||| ||  |||||||  |||  | |||||||||||  |  |||||||||||    
T  2702176 tctcacggacagttgtatgttgctgtttcaagagttacatctagagaaggactaaagatattgattgctaatgaagatggt 2702256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 189 - 303
Target Start/End: Original strand, 17757681 - 17757795
Alignment:
Q  189 atgttggagtatatctcccgacgcctgttttttctcacggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcac 288  Q
    ||||||| |||||||| || || ||||| |||||||||||||| |||||||||| |||||| ||| ||  |||||||  |||  ||||||| ||||||||    
T  17757681 atgttggtgtatatctaccaacacctgtattttctcacggacagttgtatgttgttgtttcaagagttacatctagagaaggactgaagatgttgatcac 17757780  T
Q  289 cgatgaagatggtga 303  Q
     ||||||||||||||    
T  17757781 tgatgaagatggtga 17757795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 189 - 303
Target Start/End: Original strand, 19059001 - 19059115
Alignment:
Q  189 atgttggagtatatctcccgacgcctgttttttctcacggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcac 288  Q
    ||||||| |||||||| || || ||||| |||||||||||||| |||||||||| |||||| ||| ||  |||||||  |||  ||||||| ||||||||    
T  19059001 atgttggtgtatatctaccaacacctgtattttctcacggacagttgtatgttgttgtttcaagagttacatctagagaaggactgaagatgttgatcac 19059100  T
Q  289 cgatgaagatggtga 303  Q
     ||||||||||||||    
T  19059101 tgatgaagatggtga 19059115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 183
Target Start/End: Complemental strand, 26701339 - 26701221
Alignment:
Q  65 atacctaggctatctctatcaccctccgatgtgagaatcccttttgaatttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaaca 164  Q
    ||||| ||| ||||||| ||||| || ||||| | ||| |||||  |||||||||||| ||||||| |  |  |||| |||||||| |||||||||||||    
T  26701339 atacccaggttatctctttcaccatctgatgttaaaattcctttcaaatttcaaagaagacaattttcaatatctgtttcatttgccatgacaatcaaca 26701240  T
Q  165 agagtcaaggacaatcact 183  Q
    |||||||||| ||||||||    
T  26701239 agagtcaagggcaatcact 26701221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 14604243 - 14604304
Alignment:
Q  113 tttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaagg 174  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||| || || ||||||||    
T  14604243 tttcaatgaaaacaatttcctttgactgtatcatttgcaatgacaattaataaaagtcaagg 14604304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 29692996 - 29692913
Alignment:
Q  113 tttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttgga 196  Q
    |||||| ||| |||||||||||||| ||| ||||||||||||||  | || ||||| ||||||||||||||  |||||||||||    
T  29692996 tttcaacgaagacaatttcctttggttgtctcatttgcaatgactgttaataagagccaaggacaatcacttaaaaatgttgga 29692913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 29693410 - 29693327
Alignment:
Q  113 tttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttgga 196  Q
    |||||| ||| |||||||||||||| ||| ||||||||||||||  | || ||||| ||||||||||||||  |||||||||||    
T  29693410 tttcaacgaagacaatttcctttggttgtctcatttgcaatgactgttaataagagccaaggacaatcacttaaaaatgttgga 29693327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 46590885 - 46590848
Alignment:
Q  146 tttgcaatgacaatcaacaagagtcaaggacaatcact 183  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46590885 tttgcaatgacaatcaacaagagtcaaggacaatcact 46590848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 181
Target Start/End: Complemental strand, 20370874 - 20370839
Alignment:
Q  146 tttgcaatgacaatcaacaagagtcaaggacaatca 181  Q
    ||||||||||||||||||||||||||||||||||||    
T  20370874 tttgcaatgacaatcaacaagagtcaaggacaatca 20370839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 249
Target Start/End: Complemental strand, 7549000 - 7548894
Alignment:
Q  143 tcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcacggacaattgtatgttg 242  Q
    |||||||||||||| ||||| ||||| ||||||||||| ||  ||||||||||| ||||||| || |  ||  | ||||| |||||||| || |||||||    
T  7549000 tcatttgcaatgactatcaataagagccaaggacaatctcttaaaaatgttggaatatatcttccaaaacccatattttcacacggacagttatatgttg 7548901  T
Q  243 ctgtttc 249  Q
    || ||||    
T  7548900 ctctttc 7548894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 198
Target Start/End: Complemental strand, 29679549 - 29679391
Alignment:
Q  40 aagtaatatgggtgtcagagtctttatacctaggctatctctatcaccctccgatgtgagaatcccttttgaatttcaaagaaaacaatttcctttggct 139  Q
    ||||||||| ||||  | ||| || ||||| ||| ||||||| ||||| || || || | ||| |||||  | |||||| ||| | |||||||||||| |    
T  29679549 aagtaatattggtgagaaagttttcatacccaggttatctctttcaccgtctgacgttaaaattcctttcaagtttcaacgaagaaaatttcctttggtt 29679450  T
Q  140 gtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagt 198  Q
    || |||||||||||||| || || ||||| ||| | ||||||||  |||||||||||||    
T  29679449 gtctcatttgcaatgactattaataagagccaatggcaatcacttaaaaatgttggagt 29679391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 18256115 - 18256224
Alignment:
Q  128 tttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcacg 227  Q
    ||||| ||| |||| |||||||||||||| || ||||||||||| || || ||  |  |||||||||| || ||||| ||| | ||||||||||| || |    
T  18256115 tttccgttgtctgtctcatttgcaatgactattaacaagagtcagggtcagtctttgaaaaatgttggtgtctatctaccgtctcctgttttttcacatg 18256214  T
Q  228 gacaattgta 237  Q
    ||||||||||    
T  18256215 gacaattgta 18256224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 300
Target Start/End: Complemental strand, 18986460 - 18986303
Alignment:
Q  143 tcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcacggacaattgtatgttg 242  Q
    |||||||||||||| |||||||| |||||||| |||||| |  || | ||||||||||| || ||    || |||||||| ||||||||| | |||||||    
T  18986460 tcatttgcaatgacgatcaacaaaagtcaagggcaatcattgaaagaagttggagtataccttcctcaaccggttttttcccacggacaactatatgttg 18986361  T
Q  243 ctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatgg 300  Q
    | || || ||| ||  ||| |||| ||| |||||||||||   ||| |||||||||||    
T  18986360 cggtgtcaagagttacatcaagaaaaggattgaagatattatgcacagatgaagatgg 18986303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 243
Target Start/End: Original strand, 52381895 - 52381995
Alignment:
Q  143 tcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcacggacaattgtatgttg 242  Q
    |||||||||||||| |||||||| |||||| | |||||| |  || | ||||||||||| || ||    || |||||||| ||||||||| |||||||||    
T  52381895 tcatttgcaatgacgatcaacaaaagtcaatggcaatcattgaaacaagttggagtataccttcctcaaccggttttttcccacggacaactgtatgttg 52381994  T
Q  243 c 243  Q
    |    
T  52381995 c 52381995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 56 - 306
Target Start/End: Complemental strand, 50232310 - 50232059
Alignment:
Q  56 agagtctttatacctaggctatctctatcaccctccgatgtgagaatcccttttgaatttcaaagaaaacaatttcctttggctgtatcatttgcaatga 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  50232310 agagtctttatacctaggctatctctatcaccctccgatgtgagaatcccttttaaatttcaaagaaaacaatttcctttggctgtatcatttgcgatga 50232211  T
Q  156 caatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccg-acgcctgttttttctcacggacaattgtatgttgctgtttcgagaa 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||     
T  50232210 caatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgtgcgcctgttttttctcacggacaattgtatgttgctgtttcgagag 50232111  T
Q  255 ttgtatctagaagaggtttgaagatattgatcaccgatgaagatggtgatga 306  Q
    ||  ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  50232110 ttacatctagaggaggtttgaagatattgattaccgatgaagatggtgatga 50232059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 253
Target Start/End: Complemental strand, 56476181 - 56475954
Alignment:
Q  26 aaggtaatttccagaagtaatatgggtgtcagagtctttatacctaggctatctctatcaccctccgatgtgagaatcccttttgaatttcaaagaaaac 125  Q
    |||||||||||  |||||||||| |||| || ||| |||||||| ||| |||||||||| || || |||||   ||| |||||| |||||||| ||||||    
T  56476181 aaggtaatttctggaagtaatatcggtgacaaagtgtttataccaaggttatctctatctccttcagatgtagtaattccttttaaatttcaacgaaaac 56476082  T
Q  126 aatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctca 225  Q
    || | || || ||||| |||||||||||||| || ||||| |||||||  || |||||  |  |||||||||  |||||||| |||| ||||||||||||    
T  56476081 aagtaccgttagctgtgtcatttgcaatgactattaacaaaagtcaagagcagtcacttaagcatgttggagcgtatctcccaacgcatgttttttctca 56475982  T
Q  226 cggacaattgtatgttgctgtttcgaga 253  Q
    |  |||||||||| ||||||||| ||||    
T  56475981 catacaattgtatattgctgttttgaga 56475954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 303
Target Start/End: Complemental strand, 2479604 - 2479327
Alignment:
Q  26 aaggtaatttccagaagtaatatgggtg-tcagagtctttatacctaggctatctctatcaccctccgatgtgagaatcccttttgaatttcaaagaaaa 124  Q
    ||||| ||||||||||||||| | |||| |||| || ||| ||  |||||||||| |||| || || ||||| || || || ||| | |||||| ||| |    
T  2479604 aaggtcatttccagaagtaatgttggtgatcag-gtttttgtatataggctatctatatcgccttcagatgtcaggattccctttaagtttcaacgaaga 2479506  T
Q  125 caatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctc 224  Q
     |||||||||||| ||||||||||||||||||||| ||||| || ||||| || || |   || ||||||| |||||||| || || ||||| |||||||    
T  2479505 aaatttcctttggttgtatcatttgcaatgacaattaacaaaagccaagggcagtcgcctaaacatgttggtgtatatctaccaacacctgtattttctc 2479406  T
Q  225 acggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatggtga 303  Q
    ||| ||| ||||||||| ||||||| ||| ||  ||| |||  | |  | ||||||||||| || ||||||||||||||    
T  2479405 acgcacagttgtatgttactgtttcaagagttacatccagagaatgactaaagatattgattactgatgaagatggtga 2479327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 71 - 303
Target Start/End: Original strand, 29968131 - 29968358
Alignment:
Q  71 aggctatctctatcaccctccgatgtgagaatcccttttgaatttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtc 170  Q
    ||||||||| |||| || || ||||| || || || ||| | ||||||  || ||||||| ||||| |||||||||||||||||||||| ||||| ||||    
T  29968131 aggctatctatatcgccttcagatgtcaggattccctttaagtttcaacaaagacaattttctttgactgtatcatttgcaatgacaattaacaaaagtc 29968230  T
Q  171 aaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcacggacaattgtatgttgctgtttcgagaattgtatctagaagagg 270  Q
    |||| || || ||  || ||||||| ||||||      || ||||| ||||||||||||||||||||||||| |||||| ||| ||  ||| | |  |||    
T  29968231 aagggcagtcgcttaaacatgttggtgtatat-----aacacctgtattttctcacggacaattgtatgttgttgtttcaagagttacatccaaagaagg 29968325  T
Q  271 tttgaagatattgatcaccgatgaagatggtga 303  Q
      | || ||||||||||| ||||||||||||||    
T  29968326 actaaaaatattgatcactgatgaagatggtga 29968358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 71 - 249
Target Start/End: Complemental strand, 18000800 - 18000622
Alignment:
Q  71 aggctatctctatcaccctccgatgtgagaatcccttttgaatttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtc 170  Q
    ||||||||| ||||||| || ||||| || ||  | ||| | ||| || ||| ||||||  ||||| |||||||||||||||||||||| || || ||||    
T  18000800 aggctatctatatcaccttcagatgtcaggatttcctttaagttttaacgaagacaattctctttgactgtatcatttgcaatgacaattaagaaaagtc 18000701  T
Q  171 aaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcacggacaattgtatgttgctgtttc 249  Q
    |||| || || ||  || ||||||| |||||||| || || ||||| |||||| ||||||| |||||| ||||||||||    
T  18000700 aagggcattcgcttaaacatgttggtgtatatctaccaacacctgtattttcttacggacagttgtatattgctgtttc 18000622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 113 - 303
Target Start/End: Complemental strand, 41851353 - 41851163
Alignment:
Q  113 tttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgtt-ggagtatatctcccgacg 211  Q
    |||||| ||| ||||||||||||| |||||||||||||||||| ||| ||||| ||| | ||  | || ||  || ||||| || |||||||| |  ||     
T  41851353 tttcaacgaagacaatttcctttgactgtatcatttgcaatgataattaacaaaagttaggggtagtcgcttaaacatgttgggtgtatatctactaaca 41851254  T
Q  212 cctgttttttctcacggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatggtga 303  Q
    ||||| |||||||||||||| |||||||||| |||||| ||| ||  |||||||  |||  | |||||| ||||||| ||||||||||||||    
T  41851253 cctgtattttctcacggacagttgtatgttgatgtttcaagagttacatctagagaaggactaaagata-tgatcactgatgaagatggtga 41851163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 113 - 232
Target Start/End: Complemental strand, 49200420 - 49200301
Alignment:
Q  113 tttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgc 212  Q
    |||||||||  ||| |||| ||| | ||| |||||||| ||||| || |||||||||||| |||||||||| ||| ||||||||  ||||||||| ||||    
T  49200420 tttcaaagatgacagtttcatttagttgtctcatttgccatgactattaacaagagtcaatgacaatcactccaacatgttggacaatatctcccaacgc 49200321  T
Q  213 ctgttttttctcacggacaa 232  Q
     ||| ||||| |||||||||    
T  49200320 atgtattttcgcacggacaa 49200301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 54568815 - 54568730
Alignment:
Q  111 aatttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttgga 196  Q
    |||||||||||| || ||||||  |  |||| |||||||| ||||||||||||||||||||||| ||||||||  ||| |||||||    
T  54568815 aatttcaaagaagaccatttccaatatctgtttcatttgccatgacaatcaacaagagtcaagggcaatcacttaaaagtgttgga 54568730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 183
Target Start/End: Complemental strand, 23143760 - 23143701
Alignment:
Q  124 acaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcact 183  Q
    ||||||||||||| ||||||  |||||||||||||||||||| ||  |||||||||||||    
T  23143760 acaatttcctttgtctgtatgttttgcaatgacaatcaacaaaagctaaggacaatcact 23143701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 249
Target Start/End: Original strand, 3996132 - 3996238
Alignment:
Q  143 tcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcacggacaattgtatgttg 242  Q
    |||||||| ||||| ||||| ||||||||||||||||| ||  ||||||||||| ||||||| || |  ||  | ||||| || |||||||| |||||||    
T  3996132 tcatttgcgatgactatcaataagagtcaaggacaatctcttaaaaatgttggaatatatcttccaaaacccatgttttcacatggacaattatatgttg 3996231  T
Q  243 ctgtttc 249  Q
    || ||||    
T  3996232 ctctttc 3996238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 50938696 - 50938638
Alignment:
Q  138 ctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttgga 196  Q
    |||| |||||||| ||||||||||||| ||||||| | ||||||||| |||||||||||    
T  50938696 ctgtttcatttgccatgacaatcaacaggagtcaaaggcaatcactaaaaaatgttgga 50938638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 10466710 - 10466762
Alignment:
Q  197 gtatatctcccgacgcctgttttttctcacggacaattgtatgttgctgtttc 249  Q
    |||||||| || || ||||| |||||||||||||| |||||||||||||||||    
T  10466710 gtatatctaccaacacctgtattttctcacggacagttgtatgttgctgtttc 10466762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 27707870 - 27707834
Alignment:
Q  146 tttgcaatgacaatcaacaagagtcaaggacaatcac 182  Q
    ||||||||||||||||| |||||||||||||||||||    
T  27707870 tttgcaatgacaatcaataagagtcaaggacaatcac 27707834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 303
Target Start/End: Original strand, 104539 - 104771
Alignment:
Q  71 aggctatctctatcaccctccgatgtgagaatcccttttgaatttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtc 170  Q
    ||||||||| ||||||| || ||||| || ||  | ||| | |||||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  104539 aggctatctatatcaccttcagatgtcaggattgcctttaagtttcaacgaaaacaatttcctttgactgtatcatttgcaatgacaattaacaaaagtc 104638  T
Q  171 aaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcacggacaattgtatgttgctgtttcgagaattgtatctagaagagg 270  Q
    |||| || || ||  || ||||||| |||||||| || || ||||| |||||||||||||| |||||||||  |||||| ||| |   ||| |||  |||    
T  104639 aagggcagtcgcttaaacatgttggtgtatatctaccaacacctgtattttctcacggacagttgtatgttattgtttcaagagtaacatccagagaagg 104738  T
Q  271 tttgaagatattgatcaccgatgaagatggtga 303  Q
      | |||||||||||||| ||||||||||||||    
T  104739 actaaagatattgatcactgatgaagatggtga 104771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 303
Target Start/End: Original strand, 127244 - 127420
Alignment:
Q  127 atttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcac 226  Q
    |||||||||| |||||||||||||||||||||| ||||| |||||||| || || ||  || ||||||  |||||||| || || ||| | |||||||||    
T  127244 atttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagggcagtcgcttaaacatgttgatgtatatctaccaacacctatattttctcac 127343  T
Q  227 ggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatggtga 303  Q
     |||| |||||||||  |||||| ||| |   ||| |||  |||  | |||||||||||||| || |||||||||||    
T  127344 agacagttgtatgttattgtttcaagagtaacatccagagaaggactaaagatattgatcactgacgaagatggtga 127420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 124 - 303
Target Start/End: Complemental strand, 604339 - 604160
Alignment:
Q  124 acaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttct 223  Q
    ||||||||||||| |||||||||||||||||||||| ||||| |||||||| || || ||  || ||||||| |||||||| || || ||||| ||||||    
T  604339 acaatttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagggcagtcgcttaaatatgttggtgtatatctaccaacacctgtattttct 604240  T
Q  224 cacggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatggtga 303  Q
     ||||||| ||||||||||||||||| ||| ||  ||| | |  ||| || |||||||||||||| ||||||||||||||    
T  604239 tacggacagttgtatgttgctgtttcaagagttacatccaaagaaggattaaagatattgatcactgatgaagatggtga 604160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 71 - 303
Target Start/End: Original strand, 1199410 - 1199642
Alignment:
Q  71 aggctatctctatcaccctccgatgtgagaatcccttttgaatttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtc 170  Q
    ||||||||| |||| || || ||||| || || || ||| | |||||| ||| ||||||||||||| || ||||||||||||||||||| ||||| ||||    
T  1199410 aggctatctatatcgccttcagatgtcaggattccctttaagtttcaacgaagacaatttcctttgactatatcatttgcaatgacaattaacaaaagtc 1199509  T
Q  171 aaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcacggacaattgtatgttgctgtttcgagaattgtatctagaagagg 270  Q
     ||  || || ||  || ||||| | |||||||| || || ||||| |||||||||| ||| ||||||||||||||||| ||| ||  ||| |||  ||     
T  1199510 tagagcagtcgcttaaacatgtttgtgtatatctaccaacacctgtattttctcacgaacagttgtatgttgctgtttcaagagttacatccagagaagt 1199609  T
Q  271 tttgaagatattgatcaccgatgaagatggtga 303  Q
      | |||||||||||||| ||||||||||||||    
T  1199610 actaaagatattgatcactgatgaagatggtga 1199642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 124 - 299
Target Start/End: Original strand, 44434247 - 44434421
Alignment:
Q  124 acaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttct 223  Q
    ||||||||||||| |||||||||||||||||| ||| ||||| |||||||| || || ||  || ||||||| ||||||||  | || | |||  |||||    
T  44434247 acaatttcctttgactgtatcatttgcaatgaaaattaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctatcaacacttgtactttct 44434346  T
Q  224 cacggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatg 299  Q
    |||||||| |||||||||| | |||| ||| ||  ||| | |||| |  | |||||||||||||| ||||||||||    
T  44434347 cacggacagttgtatgttgttatttcaagagttacatcca-aagaaggataaagatattgatcactgatgaagatg 44434421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 31378851 - 31378910
Alignment:
Q  124 acaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcact 183  Q
    ||||||||||||| ||||||  |||||||||||||||||||| || ||||||||||||||    
T  31378851 acaatttcctttgtctgtatgttttgcaatgacaatcaacaaaagccaaggacaatcact 31378910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 249
Target Start/End: Original strand, 44429490 - 44429615
Alignment:
Q  124 acaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttct 223  Q
    |||| |||||||| |||||||||||||||||| ||| ||||| |||||||| |  || ||  || |||||||  |||||||  | || | ||| ||||||    
T  44429490 acaaattcctttgactgtatcatttgcaatgaaaattaacaaaagtcaagggcggtcgcttaaacatgttggtatatatctatcaacacttgtattttct 44429589  T
Q  224 cacggacaattgtatgttgctgtttc 249  Q
    |||| |||||||||||||| ||||||    
T  44429590 cacgcacaattgtatgttgttgtttc 44429615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 243
Target Start/End: Original strand, 37589448 - 37589567
Alignment:
Q  124 acaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttct 223  Q
    ||||||||| ||  |||| |||||||||||||| || ||||||||||| || || ||  |  ||||||||||  | ||||| ||| | |||||||||||     
T  37589448 acaatttccgttatctgtctcatttgcaatgactattaacaagagtcagggtcagtctatgaaaaatgttggtatctatctaccgtctcctgttttttca 37589547  T
Q  224 cacggacaattgtatgttgc 243  Q
    || |||||||||||||||||    
T  37589548 catggacaattgtatgttgc 37589567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 44430683 - 44430733
Alignment:
Q  124 acaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaagg 174  Q
    ||||||||||||| |||||||||||||||||| ||| ||||| ||||||||    
T  44430683 acaatttcctttgactgtatcatttgcaatgaaaattaacaaaagtcaagg 44430733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 16468878 - 16468825
Alignment:
Q  143 tcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttgga 196  Q
    |||||||| |||||||||||||||||||| || ||||||||  |||||||||||    
T  16468878 tcatttgccatgacaatcaacaagagtcaggggcaatcacttaaaaatgttgga 16468825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 240
Target Start/End: Original strand, 4969619 - 4969734
Alignment:
Q  125 caatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctc 224  Q
    |||||||| |||||||| || ||||||||||| || ||||| ||| |||| || || ||  || |||| ||||| ||| | ||  |||||||||||||||    
T  4969619 caatttccattggctgtttcttttgcaatgactattaacaaaagttaaggccagtctcttaaacatgtgggagtttatttgccatcgcctgttttttctc 4969718  T
Q  225 acggacaattgtatgt 240  Q
    | || |||||||||||    
T  4969719 atggtcaattgtatgt 4969734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 240
Target Start/End: Complemental strand, 9885832 - 9885717
Alignment:
Q  125 caatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctc 224  Q
    |||||||| |||||||| || |||||| |||| || ||||| |||||||| || || ||  || |||| ||||| ||| | ||  |||||||||||||||    
T  9885832 caatttccattggctgtttcttttgcagtgactattaacaaaagtcaaggccagtctcttaaacatgtgggagtttatttgccatcgcctgttttttctc 9885733  T
Q  225 acggacaattgtatgt 240  Q
    | || |||||||||||    
T  9885732 atggtcaattgtatgt 9885717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 23798068 - 23798111
Alignment:
Q  139 tgtatcatttgcaatgacaatcaacaagagtcaaggacaatcac 182  Q
    ||||||||||||||||||||| || ||||||||||| |||||||    
T  23798068 tgtatcatttgcaatgacaattaataagagtcaaggtcaatcac 23798111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 30437286 - 30437191
Alignment:
Q  154 gacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcacggacaattgtatgttgctgtttc 249  Q
    |||||| ||||| |||||||| || || ||  || ||||||| |||||||| || || ||||| ||||||||| |||| |||||||||||| ||||    
T  30437286 gacaattaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacacctgtattttctcacagacagttgtatgttgctatttc 30437191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 183
Target Start/End: Original strand, 43382534 - 43382565
Alignment:
Q  152 atgacaatcaacaagagtcaaggacaatcact 183  Q
    ||||||||||||||||||||||||||||||||    
T  43382534 atgacaatcaacaagagtcaaggacaatcact 43382565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 25921053 - 25921103
Alignment:
Q  124 acaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaagg 174  Q
    |||||||||||||| ||| |  |||||||||||||| ||||||||||||||    
T  25921053 acaatttcctttggttgtgtattttgcaatgacaattaacaagagtcaagg 25921103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 6644451 - 6644390
Alignment:
Q  143 tcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatct 204  Q
    |||||| | ||||| ||||| ||||||||||||||||| ||  ||||||||||| |||||||    
T  6644451 tcatttacgatgactatcaataagagtcaaggacaatctctcaaaaatgttggaatatatct 6644390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 71 - 303
Target Start/End: Complemental strand, 23481182 - 23480950
Alignment:
Q  71 aggctatctctatcaccctccgatgtgagaatcccttttgaatttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtc 170  Q
    |||||||||||| | || || ||||| || ||||| ||| | |||||| ||| |||| ||||||||  ||||||||||||||||||||| ||||| ||||    
T  23481182 aggctatctctaccgccttcagatgtcaggatcccctttaagtttcaacgaagacaaattcctttgattgtatcatttgcaatgacaattaacaaaagtc 23481083  T
Q  171 aaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcacggacaattgtatgttgctgtttcgagaattgtatctagaagagg 270  Q
    |||| || || ||  || ||||||| |||||||| || || ||||| |||||||| ||||| |||||||||||| |||| ||| ||  ||| |||  |||    
T  23481082 aagggcagtcgcttaaacatgttggtgtatatctaccaacacctgtattttctcaaggacagttgtatgttgctatttcaagagttacatccagagaagg 23480983  T
Q  271 tttgaagatattgatcaccgatgaagatggtga 303  Q
      | |||||||||||||| ||||||||||||||    
T  23480982 actaaagatattgatcactgatgaagatggtga 23480950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 26 - 253
Target Start/End: Original strand, 23263760 - 23263986
Alignment:
Q  26 aaggtaatttccagaagtaatatgggtgtcagagtctttatacctaggctatctctatcaccctccgatgtgagaatcccttttgaatttcaaagaaaac 125  Q
    |||||||||||  |||||||||| |||| || ||| |||||||| ||| |||||||||| || || |||||   ||| |||||| |||||||| ||||||    
T  23263760 aaggtaatttctggaagtaatatcggtgacaaagtgtttataccaagggtatctctatctccttcagatgtcgtaattccttttaaatttcaacgaaaac 23263859  T
Q  126 aatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctca 225  Q
    || | ||||| ||||| |||||||||||||| || ||||| |||||||  || |||||  |  |||||||||  |||||||| |||| || |||||||||    
T  23263860 aagtacctttagctgtgtcatttgcaatgactattaacaaaagtcaagagcagtcacttaagcatgttggagcgtatctcccaacgcatg-tttttctca 23263958  T
Q  226 cggacaattgtatgttgctgtttcgaga 253  Q
    |  |||||||||| ||||||||| ||||    
T  23263959 catacaattgtatattgctgtttagaga 23263986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 113 - 303
Target Start/End: Original strand, 38685351 - 38685541
Alignment:
Q  113 tttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgc 212  Q
    |||||| ||| | ||||| ||||| |||||||||||||||||||||||||||| |||||||| || || ||  || |||||||  ||||||| || ||||    
T  38685351 tttcaacgaagataattttctttgactgtatcatttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttggtttatatctaccaacgc 38685450  T
Q  213 ctgttttttctcacggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatggtga 303  Q
    |||| |||||||||| ||| |||||||||| |||||  ||| ||  ||| |||  |||  | || ||||||||||| ||||||||||||||    
T  38685451 ctgtattttctcacgaacagttgtatgttgttgtttaaagagttacatccagagaaggactaaaaatattgatcactgatgaagatggtga 38685541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 92 - 249
Target Start/End: Original strand, 5429198 - 5429355
Alignment:
Q  92 gatgtgagaatcccttttgaatttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatg 191  Q
    ||||| ||||| || ||| | |||||| ||| ||||||||||||| |||||||||||||||||||||| ||||| |||||||| || || ||  || |||    
T  5429198 gatgttagaattccctttaagtttcaacgaagacaatttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagggcagtcgcttaaacatg 5429297  T
Q  192 ttggagtatatctcccgacgcctgttttttctcacggacaattgtatgttgctgtttc 249  Q
    |||| |||||||| || || ||||| ||||||||  |||| ||||| |||||||||||    
T  5429298 ttggtgtatatctaccaacacctgtattttctcatagacagttgtacgttgctgtttc 5429355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 196
Target Start/End: Original strand, 17287710 - 17287841
Alignment:
Q  65 atacctaggctatctctatcaccctccgatgtgagaatcccttttgaatttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaaca 164  Q
    ||||||||| ||||||| | ||| || ||||| | ||| |||||  |||| |||| || |||||||||  |  |||| |||||||| |||||||||||||    
T  17287710 atacctaggttatctctttaaccgtctgatgttaaaattcctttcaaattccaaaaaagacaatttccaatatctgtttcatttgccatgacaatcaaca 17287809  T
Q  165 agagtcaaggacaatcactacaaaatgttgga 196  Q
    ||||||||||  |||||||  |||||||||||    
T  17287810 agagtcaagggaaatcactttaaaatgttgga 17287841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 11930897 - 11930996
Alignment:
Q  75 tatctctatcaccctccgatgtgagaatcccttttgaatttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaagg 174  Q
    |||||||||| || || ||||| || || || ||| | |||||| ||| |||||||||||||  ||||||||||||||||| ||| ||||| ||||||||    
T  11930897 tatctctatcgccttcagatgtcaggattccctttaagtttcaacgaagacaatttcctttgattgtatcatttgcaatgataattaacaaaagtcaagg 11930996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 249
Target Start/End: Original strand, 23396304 - 23396410
Alignment:
Q  143 tcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcacggacaattgtatgttg 242  Q
    |||||| | ||||| ||||| ||||||||||||||||| ||  ||||||||||| ||||||| || |  ||  | ||||| |||||||| || |||||||    
T  23396304 tcatttacgatgactatcaataagagtcaaggacaatctcttaaaaatgttggaatatatcttccaaaacccatattttcacacggacagttatatgttg 23396403  T
Q  243 ctgtttc 249  Q
    || ||||    
T  23396404 ctctttc 23396410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 37891765 - 37891656
Alignment:
Q  128 tttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcacg 227  Q
    ||||| ||| |||| |||||||||||||| || ||||||||||| || || ||  |  |||||||||| || ||||| ||| |  |||||||||| || |    
T  37891765 tttccgttgtctgtctcatttgcaatgactattaacaagagtcagggtcagtctttgaaaaatgttggtgtctatctaccgtcttctgttttttcacatg 37891666  T
Q  228 gacaattgta 237  Q
    ||||||||||    
T  37891665 gacaattgta 37891656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 249
Target Start/End: Complemental strand, 17905951 - 17905826
Alignment:
Q  124 acaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttct 223  Q
    ||||||||||||| |||||||||||||||||||||| ||||| |||||||| || || ||  || ||||||| |||||||| || || ||||| ||||||    
T  17905951 acaatttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagggcagtcgcttaaacatgttggtgtatatctaccaacacctgtattttct 17905852  T
Q  224 cacggacaattgtatgttgctgtttc 249  Q
    ||| |||| |||||||||| ||||||    
T  17905851 cacagacagttgtatgttgttgtttc 17905826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 8560404 - 8560343
Alignment:
Q  113 tttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaagg 174  Q
    |||||| ||| ||||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  8560404 tttcaacgaagacaatttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagg 8560343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 34417184 - 34417101
Alignment:
Q  113 tttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttgga 196  Q
    |||||||||| |||||||||  |  |||| |||||||| |||||||||||||||||||| |||||||||||  | |||||||||    
T  34417184 tttcaaagaagacaatttccaatatctgtttcatttgccatgacaatcaacaagagtcagggacaatcacttaagaatgttgga 34417101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 4096002 - 4096039
Alignment:
Q  146 tttgcaatgacaatcaacaagagtcaaggacaatcact 183  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4096002 tttgcaatgacaatcaacaagagtcaaggacaatcact 4096039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 4439977 - 4440014
Alignment:
Q  146 tttgcaatgacaatcaacaagagtcaaggacaatcact 183  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4439977 tttgcaatgacaatcaacaagagtcaaggacaatcact 4440014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 303
Target Start/End: Original strand, 1394039 - 1394153
Alignment:
Q  189 atgttggagtatatctcccgacgcctgttttttctcacggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcac 288  Q
    ||||||| |||||||| || || ||| | |||||||||||||| |||||||||  |||||| ||| ||  |||||||  |||  | || |||||||||||    
T  1394039 atgttggtgtatatctaccaacacctatattttctcacggacagttgtatgttattgtttcaagagttacatctagagaaggactaaatatattgatcac 1394138  T
Q  289 cgatgaagatggtga 303  Q
     ||||||||||||||    
T  1394139 tgatgaagatggtga 1394153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 2736663 - 2736697
Alignment:
Q  146 tttgcaatgacaatcaacaagagtcaaggacaatc 180  Q
    |||||||||||||||||||||||||||||||||||    
T  2736663 tttgcaatgacaatcaacaagagtcaaggacaatc 2736697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 8498101 - 8498043
Alignment:
Q  138 ctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttgga 196  Q
    |||| |||||||  ||||||||||||||||||||||| ||||||||  |||||||||||    
T  8498101 ctgtttcatttgtcatgacaatcaacaagagtcaagggcaatcacttaaaaatgttgga 8498043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 303
Target Start/End: Complemental strand, 956 - 776
Alignment:
Q  124 acaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatca-ctacaaaatgttggagtatatctcccgacgcctgttttttc 222  Q
    ||||||||||||| |||||||||||||||||||||| || || |||||| | || ||  ||  || ||||||| |||||||| || ||  |||| |||||    
T  956 acaatttcctttgactgtatcatttgcaatgacaattaaaaaaagtcaaaggcagtccgcttaaacatgttggtgtatatctaccaacatctgtattttc 857  T
Q  223 tcacggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatggtga 303  Q
    ||||||||||||||||||||||||||| ||| ||  |||  ||  | |  | |||||||||||||| ||||||||||||||    
T  856 tcacggacaattgtatgttgctgtttcaagagttacatccggagaatgactaaagatattgatcactgatgaagatggtga 776  T

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Target: scaffold0345 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 303
Target Start/End: Original strand, 9261 - 9441
Alignment:
Q  124 acaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatca-ctacaaaatgttggagtatatctcccgacgcctgttttttc 222  Q
    ||||||||||||| |||||||||||||||||||||| || || |||||| | || ||  ||  || ||||||| |||||||| || ||  |||| |||||    
T  9261 acaatttcctttgactgtatcatttgcaatgacaattaaaaaaagtcaaaggcagtccgcttaaacatgttggtgtatatctaccaacatctgtattttc 9360  T
Q  223 tcacggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatggtga 303  Q
    ||||||||||||||||||||||||||| ||| ||  |||  ||  | |  | |||||||||||||| ||||||||||||||    
T  9361 tcacggacaattgtatgttgctgtttcaagagttacatccggagaatgactaaagatattgatcactgatgaagatggtga 9441  T

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Target: scaffold0105 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 303
Target Start/End: Complemental strand, 29719 - 29539
Alignment:
Q  124 acaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatca-ctacaaaatgttggagtatatctcccgacgcctgttttttc 222  Q
    ||||||||||||| |||||||||||||||||||||| || || |||||| | || ||  ||  || ||||||| |||||||| || ||  |||| |||||    
T  29719 acaatttcctttgactgtatcatttgcaatgacaattaaaaaaagtcaaaggcagtccgcttaaacatgttggtgtatatctaccaacatctgtattttc 29620  T
Q  223 tcacggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatggtga 303  Q
    ||||||||||||||||||||||||||| ||| ||  |||  ||  | |  | |||||||||||||| ||||||||||||||    
T  29619 tcacggacaattgtatgttgctgtttcaagagttacatccggagaatgactaaagatattgatcactgatgaagatggtga 29539  T

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Target: scaffold0059 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 303
Target Start/End: Complemental strand, 71470 - 71294
Alignment:
Q  127 atttcctttggctgtatcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcac 226  Q
    |||||||||| |||||||||||||||||||||| ||||| |||||||| || || ||  || ||||||  |||||||| || || ||||| |||||||||    
T  71470 atttcctttgactgtatcatttgcaatgacaattaacaaaagtcaagggcagtcgcttaaacatgttgatgtatatctaccaacacctgtattttctcac 71371  T
Q  227 ggacaattgtatgttgctgtttcgagaattgtatctagaagaggtttgaagatattgatcaccgatgaagatggtga 303  Q
    ||||| |||||||||  |||||| ||| |   ||| |||  | |  | |||||||||||||| ||||||||||||||    
T  71370 ggacagttgtatgttattgtttcaagagtaacatccagagaaagactaaagatattgatcactgatgaagatggtga 71294  T

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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 71 - 249
Target Start/End: Complemental strand, 20640328 - 20640150
Alignment:
Q  71 aggctatctctatcaccctccgatgtgagaatcccttttgaatttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtc 170  Q
    ||||||||| ||||||| || ||||| || ||  | ||| | ||| || ||| ||||||  ||||| |||||||||||||||||||||| || || ||||    
T  20640328 aggctatctatatcaccttcagatgtcaggatttcctttaagttttaacgaagacaattctctttgactgtatcatttgcaatgacaattaagaaaagtc 20640229  T
Q  171 aaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcacggacaattgtatgttgctgtttc 249  Q
    |||| || || ||  || ||||||| |||||||| || || ||||| |||||| ||||||| |||||| ||||||||||    
T  20640228 aagggcattcgcttaaacatgttggtgtatatctaccaacacctgtattttcttacggacagttgtatattgctgtttc 20640150  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 196
Target Start/End: Original strand, 9361776 - 9361907
Alignment:
Q  65 atacctaggctatctctatcaccctccgatgtgagaatcccttttgaatttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaaca 164  Q
    ||||| ||| ||| ||| ||||| |||||||| | ||| |||||  | |||||||||| |||||||||  |    || |||||||| |||||||||||||    
T  9361776 atacccaggttatttctttcaccgtccgatgttaaaattcctttcaactttcaaagaagacaatttccaatataagtttcatttgccatgacaatcaaca 9361875  T
Q  165 agagtcaaggacaatcactacaaaatgttgga 196  Q
    ||||||| || ||||||||  |||||||||||    
T  9361876 agagtcaggggcaatcacttaaaaatgttgga 9361907  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 28495830 - 28495779
Alignment:
Q  143 tcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttg 194  Q
    ||||||||  |||||||||||||||||||||| ||||||||  |||||||||    
T  28495830 tcatttgccttgacaatcaacaagagtcaagggcaatcacttaaaaatgttg 28495779  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 249
Target Start/End: Complemental strand, 13856167 - 13856061
Alignment:
Q  143 tcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatctcccgacgcctgttttttctcacggacaattgtatgttg 242  Q
    |||||| | ||||| ||||| ||||||||||||||||| ||  ||||||||||| ||||||| || |  ||  | ||||| |||||||| || |||||||    
T  13856167 tcatttacgatgactatcaataagagtcaaggacaatctcttaaaaatgttggaatatatcttccaaaacccatattttcacacggacagttatatgttg 13856068  T
Q  243 ctgtttc 249  Q
    || ||||    
T  13856067 ctctttc 13856061  T

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Target: scaffold0032 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 20796 - 20857
Alignment:
Q  113 tttcaaagaaaacaatttcctttggctgtatcatttgcaatgacaatcaacaagagtcaagg 174  Q
    |||||||| | |||||||||||||| ||| |  |||||||||||||| ||||||||||||||    
T  20796 tttcaaaggagacaatttcctttggttgtctgttttgcaatgacaattaacaagagtcaagg 20857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 5352 - 5413
Alignment:
Q  143 tcatttgcaatgacaatcaacaagagtcaaggacaatcactacaaaatgttggagtatatct 204  Q
    |||||||| ||||| ||||| ||||| ||||||||||| ||  ||||||||||| |||||||    
T  5352 tcatttgcgatgactatcaataagagccaaggacaatctcttaaaaatgttggaatatatct 5413  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 414185 - 414229
Alignment:
Q  152 atgacaatcaacaagagtcaaggacaatcactacaaaatgttgga 196  Q
    ||||||||||||||||||||||| ||||||||  ||| |||||||    
T  414185 atgacaatcaacaagagtcaagggcaatcacttaaaagtgttgga 414229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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